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Sample GSM1001838 Query DataSets for GSM1001838
Status Public on Oct 12, 2012
Title RT_200_5d_269_CLPR200_Rat_Rat230_2_RSTSRP805_2
Sample type RNA
 
Source name Lung tissue
Organism Rattus norvegicus
Characteristics array type: Rat230_2
amount to core: 40
units of amount: ul
od260: 5.615
od280: 2.789
ratio: 2.01
dilution: 1:10
bioanalyzer results: good
sample preservation: RNAlater
strain: F334/NCrl
ncbi taxonomy id: 10114
individual: 269
developmental state: adult
sacrifice method: Pentobarbitol and exsanguination
Sex: Female
age: 10
units of age: Weeks at start of exposure
tissue: Lung
tissue harvest methods: Lung samples were obtained by placing a suture loosely around the left bronchus at the site where the bronchus enters the left lung lobe. A second suture was placed around the right bronchus and pulled tightly to tie off the right lung lobes. The right lung lobes were removed and placed in RNAlater, and the left lung infused under hydrostatic pressure (~30 cm) with neutral buffered formalin. Samples placed in RNAlater were incubated overnight at 4°C and frozen the next day at < 70°C.
agent: Chloroprene
treatment repeat: 5
units of treatment repeat: day/wk
treatment duration: 5, Units of Duration: day
treatment time: 6
units of treatment time: hr/day
vehicle for chemical: Air
route of exposure: inhalation
dose or concentration: 200ppm
Biomaterial provider L. Pluta, The Hamner Institutes for Health Sciences, 6 Davis Drive, Research Triangle Park, NC, 27709, Russell Thomas, [email protected], 919 558 1311
Treatment protocol in vivo Treatment: Chloroprene, Treatment Repeat: 5, Units of Treatment Repeat: day/wk, Treatment Duration: 5, Units of Duration: day, Treatment Time: 6, Units of Treatment Time: hr/day, Vehicle for Chemical: Air, Route of Exposure: inhalation, Dose or Concentration: 200, Units of Dose or Concentration: ppm
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen Rneasy
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description RT_200_5d_269_CLPR200_Rat_Rat230_2_RSTSRP805_2: Female rats (F344/NCrl) were exposed to chloroprene (CAS 126-99-8) by whole-body inhalation exposure at 0, 5, 30, 90, or 200 ppm. Exposures were performed for 6 hr/day, 5 days per week. The animals were sacrified at 5 days or 19 days (15 exposure days) post initiation of exposure. The right lung was excised and gene expression microarray analysis was performed using Affymetrix Rat 230_2 arrays.
Data processing RMAExpress
Written by B. M. Bolstad <[email protected]>
Version: 1.0.5 Release
http://rmaexpress.bmbolstad.com
 
Submission date Sep 12, 2012
Last update date Oct 12, 2012
Contact name Longlong Yang
E-mail(s) [email protected]
Phone 919-558-1374
Organization name CIIT Centers for Health Research
Street address 6 Davis Dr.
City RTP
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1355
Series (1)
GSE40795 Transcriptomic Dose Response Changes in Female Mouse and Rat Lungs following Chloroprene Exposure

Data table header descriptions
ID_REF
VALUE RMAExpress

Data table
ID_REF VALUE
1367452_at 12.275984
1367453_at 11.368946
1367454_at 11.129339
1367455_at 11.773445
1367456_at 12.358364
1367457_at 10.7575
1367458_at 8.877753
1367459_at 13.267447
1367460_at 12.577479
1367461_at 10.777479
1367462_at 11.583236
1367463_at 10.573595
1367464_at 10.728244
1367465_at 10.796445
1367466_at 11.252208
1367467_at 11.514924
1367468_at 10.544349
1367469_at 13.116173
1367470_at 11.533989
1367471_at 10.576854

Total number of rows: 31099

Table truncated, full table size 611 Kbytes.




Supplementary file Size Download File type/resource
GSM1001838_RT_200_5d_269_CLPR200_Rat_Rat230_2_RSTSRP805_2.CEL.gz 2.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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