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Sample GSM1001833 Query DataSets for GSM1001833
Status Public on Oct 12, 2012
Title RT_200_15d_282_CLPR200_Rat_Rat230_2_RSTSRP805_2
Sample type RNA
 
Source name Lung tissue
Organism Rattus norvegicus
Characteristics array type: Rat230_2
amount to core: 40
units of amount: ul
od260: 2.877
od280: 1.421
ratio: 2.02
dilution: 1:10
rna integrity number: 9.2
bioanalyzer results: excellent
sample preservation: RNAlater
strain: F334/NCrl
ncbi taxonomy id: 10114
individual: 282
developmental state: adult
sacrifice method: Pentobarbitol and exsanguination
Sex: Female
age: 10
units of age: Weeks at start of exposure
tissue: Lung
tissue harvest methods: Lung samples were obtained by placing a suture loosely around the left bronchus at the site where the bronchus enters the left lung lobe. A second suture was placed around the right bronchus and pulled tightly to tie off the right lung lobes. The right lung lobes were removed and placed in RNAlater, and the left lung infused under hydrostatic pressure (~30 cm) with neutral buffered formalin. Samples placed in RNAlater were incubated overnight at 4°C and frozen the next day at < 70°C.
agent: Chloroprene
treatment repeat: 5
units of treatment repeat: day/wk
treatment duration: 15, Units of Duration: day
treatment time: 6
units of treatment time: hr/day
vehicle for chemical: Air
route of exposure: inhalation
dose or concentration: 200ppm
Biomaterial provider L. Pluta, The Hamner Institutes for Health Sciences, 6 Davis Drive, Research Triangle Park, NC, 27709, Russell Thomas, [email protected], 919 558 1311
Treatment protocol in vivo Treatment: Chloroprene, Treatment Repeat: 5, Units of Treatment Repeat: day/wk, Treatment Duration: 15, Units of Duration: day, Treatment Time: 6, Units of Treatment Time: hr/day, Vehicle for Chemical: Air, Route of Exposure: inhalation, Dose or Concentration: 200, Units of Dose or Concentration: ppm
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen Rneasy
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description RT_200_15d_282_CLPR200_Rat_Rat230_2_RSTSRP805_2: Female rats (F344/NCrl) were exposed to chloroprene (CAS 126-99-8) by whole-body inhalation exposure at 0, 5, 30, 90, or 200 ppm. Exposures were performed for 6 hr/day, 5 days per week. The animals were sacrified at 5 days or 19 days (15 exposure days) post initiation of exposure. The right lung was excised and gene expression microarray analysis was performed using Affymetrix Rat 230_2 arrays.
Data processing RMAExpress
Written by B. M. Bolstad <[email protected]>
Version: 1.0.5 Release
http://rmaexpress.bmbolstad.com
 
Submission date Sep 12, 2012
Last update date Oct 12, 2012
Contact name Longlong Yang
E-mail(s) [email protected]
Phone 919-558-1374
Organization name CIIT Centers for Health Research
Street address 6 Davis Dr.
City RTP
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1355
Series (1)
GSE40795 Transcriptomic Dose Response Changes in Female Mouse and Rat Lungs following Chloroprene Exposure

Data table header descriptions
ID_REF
VALUE RMAExpress

Data table
ID_REF VALUE
1367452_at 12.150458
1367453_at 11.750254
1367454_at 11.110968
1367455_at 11.846945
1367456_at 11.740153
1367457_at 10.35725
1367458_at 9.406411
1367459_at 13.440035
1367460_at 11.721369
1367461_at 9.924169
1367462_at 12.114314
1367463_at 11.153399
1367464_at 11.382628
1367465_at 11.520517
1367466_at 11.183432
1367467_at 11.693907
1367468_at 11.399302
1367469_at 12.330594
1367470_at 11.490819
1367471_at 11.198935

Total number of rows: 31099

Table truncated, full table size 611 Kbytes.




Supplementary file Size Download File type/resource
GSM1001833_RT_200_15d_282_CLPR200_Rat_Rat230_2_RSTSRP805_2.CEL.gz 2.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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