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Sample GSM1001828 Query DataSets for GSM1001828
Status Public on Oct 12, 2012
Title RT_0_5d_206_Lung_ACO2_RSTSRP805
Sample type RNA
 
Source name Lung tissue
Organism Rattus norvegicus
Characteristics array type: Rat230_2
amount to core: 40
units of amount: ul
od260: 3.046
od280: 1.539
ratio: 1.98
dilution: 1:10
bioanalyzer results: good
sample preservation: RNAlater
strain: F334/NCrl
ncbi taxonomy id: 10114
individual: 206
developmental state: adult
sacrifice method: Pentobarbitol and exsanguination
Sex: Female
age: 10
units of age: Weeks at start of exposure
tissue: Lung
tissue harvest methods: Lung samples were obtained by placing a suture loosely around the left bronchus at the site where the bronchus enters the left lung lobe. A second suture was placed around the right bronchus and pulled tightly to tie off the right lung lobes. The right lung lobes were removed and placed in RNAlater, and the left lung infused under hydrostatic pressure (~30 cm) with neutral buffered formalin. Samples placed in RNAlater were incubated overnight at 4°C and frozen the next day at < 70°C.
agent: Air Control
treatment repeat: 5
units of treatment repeat: day/wk
treatment duration: 5, Units of Duration: day
treatment time: 6
units of treatment time: hr/day
vehicle for chemical: Air
route of exposure: inhalation
dose or concentration: 0ppm
Biomaterial provider L. Pluta, The Hamner Institutes for Health Sciences, 6 Davis Drive, Research Triangle Park, NC, 27709, Russell Thomas, [email protected], 919 558 1311
Treatment protocol in vivo Treatment: Air Control, Treatment Repeat: 5, Units of Treatment Repeat: day/wk, Treatment Duration: 5, Units of Duration: day, Treatment Time: 6, Units of Treatment Time: hr/day, Vehicle for Chemical: Air, Route of Exposure: inhalation, Dose or Concentration: 0, Units of Dose or Concentration: ppm
Extracted molecule total RNA
Extraction protocol Extraction Method: Trizol
Additional Purification Method: Qiagen Rneasy
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description RT_0_5d_206_Lung_ACO2_RSTSRP805_Rat_Rat230_2_RSTSRP805_2: Female rats (F344/NCrl) were exposed to chloroprene (CAS 126-99-8) by whole-body inhalation exposure at 0, 5, 30, 90, or 200 ppm. Exposures were performed for 6 hr/day, 5 days per week. The animals were sacrified at 5 days or 19 days (15 exposure days) post initiation of exposure. The right lung was excised and gene expression microarray analysis was performed using Affymetrix Rat 230_2 arrays.
Data processing RMAExpress
Written by B. M. Bolstad <[email protected]>
Version: 1.0.5 Release
http://rmaexpress.bmbolstad.com
 
Submission date Sep 12, 2012
Last update date Oct 12, 2012
Contact name Longlong Yang
E-mail(s) [email protected]
Phone 919-558-1374
Organization name CIIT Centers for Health Research
Street address 6 Davis Dr.
City RTP
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1355
Series (1)
GSE40795 Transcriptomic Dose Response Changes in Female Mouse and Rat Lungs following Chloroprene Exposure

Data table header descriptions
ID_REF
VALUE RMAExpress

Data table
ID_REF VALUE
1367452_at 12.502533
1367453_at 11.34099
1367454_at 11.289028
1367455_at 11.888757
1367456_at 12.371022
1367457_at 10.734866
1367458_at 9.018228
1367459_at 13.385391
1367460_at 12.552757
1367461_at 10.900775
1367462_at 11.815964
1367463_at 10.635797
1367464_at 10.884818
1367465_at 11.346229
1367466_at 11.174351
1367467_at 11.640062
1367468_at 10.793086
1367469_at 13.02765
1367470_at 11.532546
1367471_at 10.601021

Total number of rows: 31099

Table truncated, full table size 611 Kbytes.




Supplementary file Size Download File type/resource
GSM1001828_RT_0_5d_206_Lung_ACO2_RSTSRP805_Rat_Rat230_2_RSTSRP805_2.CEL.gz 2.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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