NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE98358 Query DataSets for GSE98358
Status Public on Jul 23, 2017
Title ATAC-seq and H4K16ac ChIP-seq profiles of E14 ES cells treated with cycloheximide
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ATAC-seq and H4K16ac ChIP-seq profiles of E14 ES cells before and after treatment with cycloheximide (CHX, 1 ug/ml) for 3 hours.
 
Overall design ATAC-seq and H4K16ac ChIP-seq profiles of E14 ES cells before and after treatment with cycloheximide (CHX, 1 ug/ml) for 3 hours.
 
Contributor(s) Bulut-Karslioglu A, Macrae TA, Ramalho-Santos M
Citation Aydan Bulut-Karslioglu, Trisha A Macrae, Juan A Oses-Prieto, Sergio Covarrubias, Michelle Percharde, Gregory Ku, Aaron Diaz, Michael T McManus, Alma L Burlingame, and Miguel Ramalho-santos. The transcriptionally permissive chromatin state of ES cells is acutely tuned to translational output. bioRxiv 2017. doi:10.1101/167239
Submission date Apr 28, 2017
Last update date Jul 25, 2021
Contact name Miguel Ramalho-Santos
Organization name UCSF
Street address 35 Medical Center Way, RMB 912D
City San Francsico
State/province California
ZIP/Postal code 94143
Country USA
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (14)
GSM2592676 Ctrl_ATACseq_rep1
GSM2592677 Ctrl_ATACseq_rep2
GSM2592678 Ctrl_ATACseq_rep3
Relations
BioProject PRJNA384807
SRA SRP105440

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE98358_CHX-gained_ATAC-seq_peaks.bed.gz 8.6 Kb (ftp)(http) BED
GSE98358_CHX-lost_ATAC-seq_peaks.bed.gz 5.4 Kb (ftp)(http) BED
GSE98358_RAW.tar 1.9 Gb (http)(custom) TAR (of BIGWIG, BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap