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Series GSE96868 Query DataSets for GSE96868
Status Public on Sep 26, 2017
Title Hippo reprograms the transcriptional response to Ras signalling
Organism Drosophila melanogaster
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary Mutations that lead to hyperactivation of Ras signaling are hallmarks of carcinomas. During development, signaling via Ras mediates cell fate decisions and cellular differentiation without causing hyper-proliferation. What determines whether Ras activation leads to differentiation or proliferation remains unknown. Here we show that the Hippo pathway reprograms the cellular response to Ras signaling in Drosophila. While hyperactivation of Ras signaling alone promotes cellular differentiation, additional loss of Hippo signaling drives aggressive hyper-proliferation. Transcriptome analysis combined with ChIP-nexus confirmed that the magnitude and specificity of Ras target gene expression strongly depends on the activity status of the Hippo pathway. This is because Hippo signaling directly regulates the expression of two key downstream transcription factors of the Ras pathway: the ETS-domain transcription factor Pointed and the transcriptional repressor Capicua. Our results highlight how independent signaling pathways can impinge on each other at the level of transcription factors, thereby providing a safety mechanism to keep proliferation in check under normal developmental conditions.​
 
Overall design RNA-seq on ​wing imaginal discs​ from 3rd instar Drosophila larvae with wild type control, cic or wts single mutant and cic wts double-mutant cell clones.
ChIP-Nexus-seq against Scalloped and Capicua on wing imaginal discs​ from 3rd instar Drosophila larvae with wild type control, wts single mutant and cic wts double-mutant cell clones.
 
Contributor(s) Hamaratoglu F, Jacobs J, Aerts S
Citation(s) 28950103
Submission date Mar 21, 2017
Last update date May 15, 2019
Contact name Jelle Jacobs
E-mail(s) [email protected]
Organization name Institute of molecular Pathology
Department VBC
Lab Stark lab
Street address Campus-Vienna-Biocenter 1
City Vienna
ZIP/Postal code 1030
Country Austria
 
Platforms (2)
GPL17275 Illumina HiSeq 2500 (Drosophila melanogaster)
GPL19132 Illumina NextSeq 500 (Drosophila melanogaster)
Samples (31)
GSM2545293 FRT82B_d5_S1_mRNA
GSM2545294 FRT82B_d5_S2_mRNA
GSM2545295 FRT82B_d5_S3_mRNA
Relations
BioProject PRJNA379962
SRA SRP102242

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE96868_RAW.tar 1.1 Gb (http)(custom) TAR (of BW)
GSE96868_RNA_seq_rawcounts_18samples.tsv.gz 394.1 Kb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file

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