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| Status |
Public on Dec 15, 2016 |
| Title |
Seasonal gene expression in a migratory songbird |
| Organism |
Catharus ustulatus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We sequenced mRNA from brain samples of 20 captive Swainson's thrushes. 10 were from California, belonging to the coastal subspecies, and 10 were from Alaska, belonging to the inland subspecies.
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| Overall design |
Gene expression level analysis of Swainson's thrushes maintained in captivity for >1 year. The study treatments were: non-migratory inland (N = 4), non-migratory coastal (N = 6), migratory inland (N = 6), migratory coastal (N = 4).
This Series includes 19 Samples. This Series does not include migratory inland Sample t22 (it was not included in any analyses because its overall expression was an outlier to the remaining dataset).
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| |
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| Contributor(s) |
Johnston R |
| Citation(s) |
27747949 |
| |
| Submission date |
Oct 03, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Rachel A Johnston |
| E-mail(s) |
[email protected]
|
| Organization name |
Duke University
|
| Department |
Evolutionary Anthropology
|
| Lab |
Jenny Tung
|
| Street address |
130 Science Dr, Rm 108 Biological Sciences
|
| City |
Durham |
| State/province |
NC |
| ZIP/Postal code |
27708 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL22518 |
Illumina HiSeq 2000 (Catharus ustulatus) |
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| Samples (19)
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| Relations |
| BioProject |
PRJNA345168 |
| SRA |
SRP090743 |
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