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Series GSE86779

Query DataSets for GSE86779

Status

Public on Oct 14, 2016

Title

ChIP-seq from forebrain (ENCSR992SHK)

Project

Mouse ENCODE

Organism

Mus musculus

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

H3K4me1 ChIP-seq on embryonic 10.5 day mouse forebrain

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR992SHK/

Citation(s)

22955616

BioProject

PRJNA63471

Submission date

Sep 09, 2016

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

[email protected]

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL21103

Illumina HiSeq 4000 (Mus musculus)

Samples (2)

GSM2308662	ChIP-seq from forebrain (ENCLB900RYV)
GSM2308663	ChIP-seq from forebrain (ENCLB476ARX)

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE86779_ENCFF027RGW_replicated_peaks_mm10.bed.gz	3.4 Mb	(ftp)(http)	BED
GSE86779_ENCFF350UJK_peaks_mm10.bed.gz	3.4 Mb	(ftp)(http)	BED
GSE86779_ENCFF625NET_replicated_peaks_mm10.bigBed	6.9 Mb	(ftp)(http)	BIGBED
GSE86779_ENCFF717WIV_signal_p-value_mm10.bigWig	1.4 Gb	(ftp)(http)	BIGWIG
GSE86779_ENCFF739NQW_fold_change_over_control_mm10.bigWig	1.6 Gb	(ftp)(http)	BIGWIG
GSE86779_ENCFF996NFS_peaks_mm10.bigBed	9.0 Mb	(ftp)(http)	BIGBED
GSE86779_RAW.tar	4.0 Gb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
SRA Run Selector
Raw data provided as supplementary file
Processed data provided as supplementary file
Processed data are available on Series record