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GEO accession:
Series GSE70608
Query DataSets for GSE70608
Status
Public on May 16, 2016
Title
Single Cell Sequencing Identifies Key Epigenetic Regulators in Nuclear Transfer Mediated Reprogramming.
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
27462457
,
27626379
Submission date
Jul 07, 2015
Last update date
May 15, 2019
Contact name
Shaorong Gao
Organization name
Tongji University
Department
School of life science and technology
Lab
Gaolab
Street address
1239 Siping Road, Yangpu District
City
Shanghai
State/province
Shanghai
ZIP/Postal code
200092
Country
China
Platforms (1)
GPL13112
Illumina HiSeq 2000 (Mus musculus)
Samples (191)
Less...
More...
GSM1811625
NT 2-cell arrest 1 [RNA-seq]
GSM1811626
NT 2-cell arrest 2 [RNA-seq]
GSM1811627
NT 2-cell arrest 3 [RNA-seq]
GSM1811628
NT 2-cell arrest 4 [RNA-seq]
GSM1811629
NT 2-cell arrest 5 [RNA-seq]
GSM1811630
NT 2-cell arrest 6 [RNA-seq]
GSM1811631
NT 2-cell arrest 7 [RNA-seq]
GSM1811632
NT 2-cell arrest 8 [RNA-seq]
GSM1811633
NT 4-cell arrest 1 [RNA-seq]
GSM1811634
NT 4-cell arrest 2 [RNA-seq]
GSM1811635
NT 4-cell arrest 3 [RNA-seq]
GSM1811636
NT 4-cell arrest 4 [RNA-seq]
GSM1811637
NT 4-cell arrest 5 [RNA-seq]
GSM1811638
NT 4-cell arrest in 2-cell stage 1 [RNA-seq]
GSM1811639
NT 4-cell arrest in 2-cell stage 2 [RNA-seq]
GSM1811640
NT 4-cell arrest in 2-cell stage 3 [RNA-seq]
GSM1811641
NT 4-cell arrest in 2-cell stage 4 [RNA-seq]
GSM1811642
NT 4-cell arrest in 2-cell stage 5 [RNA-seq]
GSM1811643
NT 4-cell arrest in 2-cell stage 6 [RNA-seq]
GSM1811644
NT Kdm4b+Kdm5b 2-cell 1 [RNA-seq]
GSM1811645
NT Kdm4b+Kdm5b 2-cell 2 [RNA-seq]
GSM1811646
NT Kdm4b+Kdm5b 2-cell 3 [RNA-seq]
GSM1811647
NT Kdm4b+Kdm5b 2-cell 4 [RNA-seq]
GSM1811648
NT Kdm4b+Kdm5b 2-cell 5 [RNA-seq]
GSM1811649
NT Kdm4b+Kdm5b 2-cell 6 [RNA-seq]
GSM1811650
NT Kdm4b+Kdm5b 4-cell 1 [RNA-seq]
GSM1811651
NT Kdm4b+Kdm5b 4-cell 2 [RNA-seq]
GSM1811652
NT Kdm4b+Kdm5b 4-cell 3 [RNA-seq]
GSM1811653
NT Kdm4b+Kdm5b 4-cell 4 [RNA-seq]
GSM1811654
NT Kdm4b+Kdm5b 4-cell 5 [RNA-seq]
GSM1811655
NT Kdm4b+Kdm5b ICM 1 [RNA-seq]
GSM1811656
NT Kdm4b+Kdm5b ICM 2 [RNA-seq]
GSM1811657
NT Kdm4b+Kdm5b ICM 3 [RNA-seq]
GSM1811658
NT Kdm4b+Kdm5b TE 1 [RNA-seq]
GSM1811659
NT Kdm4b+Kdm5b TE 2 [RNA-seq]
GSM1811660
NT Kdm4b+Kdm5b TE 3 [RNA-seq]
GSM1811661
NT Kdm4b 2-cell 1 [RNA-seq]
GSM1811662
NT Kdm4b 2-cell 2 [RNA-seq]
GSM1811663
NT Kdm4b 2-cell 3 [RNA-seq]
GSM1811664
NT Kdm4b 2-cell 4 [RNA-seq]
GSM1811665
NT Kdm4b 2-cell 5 [RNA-seq]
GSM1811666
NT Kdm4b ICM 1 [RNA-seq]
GSM1811667
NT Kdm4b ICM 2 [RNA-seq]
GSM1811668
NT Kdm4b ICM 3 [RNA-seq]
GSM1811669
NT Kdm4b ICM 4 [RNA-seq]
GSM1811670
NT Kdm4b ICM 5 [RNA-seq]
GSM1811671
NT Kdm4b TE 1 [RNA-seq]
GSM1811672
NT Kdm4b TE 2 [RNA-seq]
GSM1811673
NT Kdm4b TE 3 [RNA-seq]
GSM1811674
NT Kdm4b TE 4 [RNA-seq]
GSM1811675
NT Kdm4b TE 5 [RNA-seq]
GSM1811676
NT Kdm4d 2-cell 1 [RNA-seq]
GSM1811677
NT Kdm4d 2-cell 2 [RNA-seq]
GSM1811678
NT Kdm4d 2-cell 3 [RNA-seq]
GSM1811679
NT Kdm5b 4-cell 1 [RNA-seq]
GSM1811680
NT Kdm5b 4-cell 2 [RNA-seq]
GSM1811681
NT Kdm5b 4-cell 3 [RNA-seq]
GSM1811682
NT Kdm5b 4-cell 4 [RNA-seq]
GSM1811683
NT Kdm5b 4-cell 5 [RNA-seq]
GSM1811684
NT Kdm5b TE 1 [RNA-seq]
GSM1811685
NT Kdm5b TE 2 [RNA-seq]
GSM1811686
NT Kdm5b TE 3 [RNA-seq]
GSM1811687
NT Kdm5b TE 4 [RNA-seq]
GSM1811688
NT Kdm5b TE 5 [RNA-seq]
GSM1811689
NT 2-cell to blastocyst 1 [RNA-seq]
GSM1811690
NT 2-cell to blastocyst 2 [RNA-seq]
GSM1811691
NT 2-cell to blastocyst 3 [RNA-seq]
GSM1811692
NT 2-cell to blastocyst 4 [RNA-seq]
GSM1811693
NT 2-cell to blastocyst 5 [RNA-seq]
GSM1811694
NT 2-cell to blastocyst 6 [RNA-seq]
GSM1811695
NT 2-cell to blastocyst 7 [RNA-seq]
GSM1811696
NT 2-cell to blastocyst 8 [RNA-seq]
GSM1811697
NT 4-cell to blastocyst 1 [RNA-seq]
GSM1811698
NT 4-cell to blastocyst 2 [RNA-seq]
GSM1811699
NT 4-cell to blastocyst 3 [RNA-seq]
GSM1811700
NT 4-cell to blastocyst 4 [RNA-seq]
GSM1811701
NT 4-cell to blastocyst 5 [RNA-seq]
GSM1811702
NT 4-cell to blastocyst 6 [RNA-seq]
GSM1811703
NT 4-cell to blastocyst 7 [RNA-seq]
GSM1811704
NT 4-cell to blastocyst 8 [RNA-seq]
GSM1811705
NT 4-cell to blastocyst 9 [RNA-seq]
GSM1811706
Cumulus cell 1 [RNA-seq]
GSM1811707
Cumulus cell 2 [RNA-seq]
GSM1811708
Cumulus cell 3 [RNA-seq]
GSM1811709
Cumulus cell 4 [RNA-seq]
GSM1811710
Cumulus cell 5 [RNA-seq]
GSM1811711
Cumulus cell 6 [RNA-seq]
GSM1811712
NT ICM 1 [RNA-seq]
GSM1811713
NT ICM 2 [RNA-seq]
GSM1811714
NT ICM 3 [RNA-seq]
GSM1811715
NT ICM 4 [RNA-seq]
GSM1811716
NT ICM 5 [RNA-seq]
GSM1811717
NT TE 1 [RNA-seq]
GSM1811718
NT TE 2 [RNA-seq]
GSM1811719
NT TE 3 [RNA-seq]
GSM1811720
NT TE 4 [RNA-seq]
GSM1811721
WT 2-cell 1 [RNA-seq]
GSM1811722
WT 2-cell 2 [RNA-seq]
GSM1811723
WT 2-cell 3 [RNA-seq]
GSM1811724
WT 2-cell 4 [RNA-seq]
GSM1811725
WT 2-cell 5 [RNA-seq]
GSM1811726
WT 4-cell 1 [RNA-seq]
GSM1811727
WT 4-cell 2 [RNA-seq]
GSM1811728
WT 4-cell 3 [RNA-seq]
GSM1811729
WT 4-cell 4 [RNA-seq]
GSM1811730
WT 4-cell 5 [RNA-seq]
GSM1811731
WT 4-cell 6 [RNA-seq]
GSM1811732
WT 8-cell 1 [RNA-seq]
GSM1811733
WT 8-cell 2 [RNA-seq]
GSM1811734
WT 8-cell 3 [RNA-seq]
GSM1811735
WT 8-cell 4 [RNA-seq]
GSM1811736
WT 8-cell 5 [RNA-seq]
GSM1811737
WT 8-cell 6 [RNA-seq]
GSM1811738
WT Blastocyst 1 [RNA-seq]
GSM1811739
WT Blastocyst 2 [RNA-seq]
GSM1811740
WT Blastocyst 3 [RNA-seq]
GSM1811741
WT Blastocyst 4 [RNA-seq]
GSM1811742
WT ICM 1 [RNA-seq]
GSM1811743
WT ICM 2 [RNA-seq]
GSM1811744
WT ICM 3 [RNA-seq]
GSM1811745
WT ICM 4 [RNA-seq]
GSM1811746
WT ICM 5 [RNA-seq]
GSM1811747
WT Morula 1 [RNA-seq]
GSM1811748
WT Morula 2 [RNA-seq]
GSM1811749
WT Morula 3 [RNA-seq]
GSM1811750
WT Morula 4 [RNA-seq]
GSM1811751
WT Morula 5 [RNA-seq]
GSM1811752
WT Morula 6 [RNA-seq]
GSM1811753
WT MII oocyte 1 [RNA-seq]
GSM1811754
WT MII oocyte 2 [RNA-seq]
GSM1811755
WT MII oocyte 3 [RNA-seq]
GSM1811756
WT MII oocyte 4 [RNA-seq]
GSM1811757
WT MII oocyte 5 [RNA-seq]
GSM1811758
WT MII oocyte 6 [RNA-seq]
GSM1811759
WT TE 1 [RNA-seq]
GSM1811760
WT TE 2 [RNA-seq]
GSM1811761
WT TE 3 [RNA-seq]
GSM1811762
WT TE 4 [RNA-seq]
GSM1811763
WT TE 5 [RNA-seq]
GSM1811764
WT TE 6 [RNA-seq]
GSM1811765
WT Zygote 1 [RNA-seq]
GSM1811766
WT Zygote 2 [RNA-seq]
GSM1811767
WT Zygote 3 [RNA-seq]
GSM1811768
WT Zygote 4 [RNA-seq]
GSM1811769
WT Zygote 5 [RNA-seq]
GSM1811770
CC H3K9me3 ChIP-Seq
GSM1811771
CC input ChIP-Seq
GSM1811772
NT Kdm4b H3K9me3 ChIP-Seq 1
GSM1811773
NT Kdm4b H3K9me3 ChIP-Seq 2
GSM1811774
NT Kdm4b input ChIP-Seq
GSM1811775
NT H3K9me3 ChIP-Seq
GSM1811776
NT input ChIP-Seq
GSM1811777
WT H3K9me3 ChIP-Seq 1
GSM1811778
WT H3K9me3 ChIP-Seq 2
GSM1811779
WT input ChIP-Seq
GSM1811780
NT 2-cell arrest 1 [RRBS]
GSM1811781
NT 2-cell arrest 2 [RRBS]
GSM1811782
NT 2-cell arrest 3 [RRBS]
GSM1811783
NT 2-cell arrest 4 [RRBS]
GSM1811784
NT 2-cell arrest 5 [RRBS]
GSM1811785
NT 2-cell arrest 6 [RRBS]
GSM1811786
NT 2-cell arrest 7 [RRBS]
GSM1811787
NT 2-cell arrest 8 [RRBS]
GSM1811788
NT 4-cell arrest 1 [RRBS]
GSM1811789
NT 4-cell arrest 2 [RRBS]
GSM1811790
NT 4-cell arrest 3 [RRBS]
GSM1811791
NT 4-cell arrest 4 [RRBS]
GSM1811792
NT 2-cell to blastocyst 1 [RRBS]
GSM1811793
NT 2-cell to blastocyst 2 [RRBS]
GSM1811794
NT 2-cell to blastocyst 3 [RRBS]
GSM1811795
NT 2-cell to blastocyst 4 [RRBS]
GSM1811796
NT 2-cell to blastocyst 5 [RRBS]
GSM1811797
NT 2-cell to blastocyst 6 [RRBS]
GSM1811798
NT 2-cell to blastocyst 7 [RRBS]
GSM1811799
NT 2-cell to blastocyst 8 [RRBS]
GSM1811800
NT 4-cell to blastocyst 1 [RRBS]
GSM1811801
NT 4-cell to blastocyst 2 [RRBS]
GSM1811802
NT 4-cell to blastocyst 3 [RRBS]
GSM1811803
NT 4-cell to blastocyst 4 [RRBS]
GSM1811804
NT 4-cell to blastocyst 5 [RRBS]
GSM1811805
NT 4-cell to blastocyst 6 [RRBS]
GSM1811806
NT 4-cell to blastocyst 7 [RRBS]
GSM1811807
WT 2-cell 1 [RRBS]
GSM1811808
WT 2-cell 2 [RRBS]
GSM1811809
WT 2-cell 3 [RRBS]
GSM1811810
WT 4-cell 1 [RRBS]
GSM1811811
WT 4-cell 2 [RRBS]
GSM1811812
WT 4-cell 3 [RRBS]
GSM1811813
WT CC 1 [RRBS]
GSM1811814
WT CC 2 [RRBS]
GSM1811815
WT CC 3 [RRBS]
This SuperSeries is composed of the following SubSeries:
GSE70605
Single Cell Sequencing Identifies Key Epigenetic Regulators in Nuclear Transfer Mediated Reprogramming [RNA-seq]
GSE70606
Single Cell Sequencing Identifies Key Epigenetic Regulators in Nuclear Transfer Mediated Reprogramming [ChIP-seq]
GSE70607
Single Cell Sequencing Identifies Key Epigenetic Regulators in Nuclear Transfer Mediated Reprogramming [RRBS]
Relations
BioProject
PRJNA289141
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File type/resource
GSE70608_RAW.tar
926.3 Mb
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