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Series GSE68969 Query DataSets for GSE68969
Status Public on May 17, 2018
Title Transcriptomic profiling of C57BL/APC-KO mice after 9 months treatment with Phenobarbital
Organism Mus musculus
Experiment type Expression profiling by array
Summary In rodent liver, a single injection of N-nitrosodiethylamine (DEN) followed by chronic treatment with the antiepileptic drug phenobarbital (PB) promotes the outgrowth of hepatocellular tumors with activating mutations in Ctnnb1, encoding the transcription factor β-catenin. We now studied long-term effects of PB treatment in livers of transgenic mice with hepatocyte-specific knockout (KO) of Apc, a negative regulator of β-catenin signaling. The number of Apc KO hepatocytes present in the liver decreased with age, indicative of a selective disadvantage of Apc KO cells in the absence of PB. Following liver tumor promotion by PB in Apc KO mice for 9 months, tumor burden was quantified and histological appearance, gene expression profiles, and activity of oncogenic signaling pathways of the tumors were analyzed. In Apc KO mice fed with PB, we observed an increased hepatic tumor volume fraction and tumor multiplicity, as compared to non-promoted animals. Tumors in the PB-treated Apc KO group were mostly eosinophilic hepatocellular adenoma with activated β-catenin, due to the deletion of Apc. These tumors exhibited striking phenotypic similarities to DEN-induced Ctnnb1-mutated tumors, regarding histological appearance and expression of marker proteins and mRNAs. A particular sub-population of tumors, Apc KO-driven basophilic hepatocellular carcinomas, exclusively appeared in the non-PB-treated group but was absent from PB-promoted livers. In conclusion, phenobarbital promotes the outgrowth of Apc-deficient, β-catenin-activated hepatocellular adenoma while simultaneously inhibiting the formation of a certain population of Apc-driven hepatocellular carcinoma.
 
Overall design 6 weeks old male C57BL mice with a triggerable APC knockout received a tumor initiation dose of DEN prior to 9 months of treatment with or without 0.05% Phenobarbital. We profiled mRNA expression in liver tissue to assess the effects of the APC knockout on tumor development with PB.
 
Contributor(s) Braeuning A, Römer M, Schwarz M
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Submission date May 18, 2015
Last update date Feb 11, 2019
Contact name Jonathan Moggs
E-mail(s) [email protected]
Organization name Novartis
Street address Fabrikstrasse 2
City Basel
ZIP/Postal code 4056
Country Switzerland
 
Platforms (1)
GPL1261 [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array
Samples (20)
GSM1689057 H2O_NT_1
GSM1689058 H2O_NT_2
GSM1689059 H2O_NT_3
This SubSeries is part of SuperSeries:
GSE68387 IMI MARCAR Project: towards novel biomarkers for cancer risk assessment
Relations
BioProject PRJNA284239

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE68969_RAW.tar 71.9 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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