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| Status |
Public on Aug 15, 2006 |
| Title |
Expression data from 7 day old Arabidopsis roots with 1h Red light or dark |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by array
|
| Summary |
Red light can affect a variety of responses in Arabidopsis. We characterize the early gene expression patterns of roots exposed to 1 hour of red light. Early genes indicate elements involved in photomorphogenesis, chloroplast development, PAL pathways, root hair development are regulated by 1 hour of red light
We used microarrays to detail the gene expression underlying the effects of red light on roots.
Keywords: treatment
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| Overall design |
7 Day dark-grown 1 cm Arabidopsis root tips were harvested for RNA extraction and hybridization on Affymetrix microarrays. We pooled samples from several Petri plates for each experiment to obtain enough RNA for arrays. Three experiments were performed. Treatment 1 hour of red light 630 nm (max) and dark controls
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| |
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| Contributor(s) |
Molas ML, Kiss J, Correll MJ |
| Citation(s) |
16908503 |
| |
| Submission date |
May 26, 2006 |
| Last update date |
Jun 12, 2017 |
| Contact name |
Melanie Correll |
| E-mail(s) |
[email protected]
|
| Fax |
352-392-4092
|
| URL |
http://www.agen.ufl.edu/newsite/mainpages/Faculty_pages/PDF%20Profiles%20rev/Correll_Melanie.pdf
|
| Organization name |
University of Florida
|
| Department |
Agricultural and Biological Engineering
|
| Lab |
Correll
|
| Street address |
142 Frazier Rogers Hall
|
| City |
Gainesville |
| State/province |
FL |
| ZIP/Postal code |
32606 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL198 |
[ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array |
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| Samples (6)
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| GSM111156 |
7d dark root 1h dark light, biological rep1 |
| GSM111157 |
7d dark root 1h red light, biological rep1 |
| GSM111158 |
7d dark root 1h dark light, biological rep2 |
| GSM111159 |
7d dark root 1h red light, biological rep2 |
| GSM111160 |
7d dark root 1h dark light, biological rep3 |
| GSM111161 |
7d dark root 1h red light, biological rep3 |
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| Relations |
| BioProject |
PRJNA95885 |
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