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| Status |
Public on Aug 15, 2003 |
| Title |
pmr4 vs. wild-type (May, 2003) |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by array
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| Summary |
There were two genotypes:
(1) Columbia-0, wild-type (C)
(2) pmr4-1 mutant (P), callose synthase deficient mutant (Vogel and Somerville (2000) Proc. Natl. Acad. Sci., USA 97: 1897).
There were two treatments:
(1) uninoculated (U)
(2) 3 days after inoculation with the powdery mildew pathogen, Erysiphe cichoracearum, race UCSC (I).
There were four biological replicates, labeled 1, 2, 3 or 4.
Examples of the sample labels are:
CU1 = Columbia-0, uninoculated, replicate 1
CI2 = Columbia-0, 3 days after inoculation with powdery mildew, replicate 2
PU3 = pmr4-1, uninoculated, replicate 3
PI4 = pmr4-1, 3 days after inoculation with powdery mildew, replicate 4.
In total, there were 16 Affymetrix ATH1 GeneChips (2 genotypes x 2 treatments x 4 biological replicates).
Keywords: repeat sample
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| Contributor(s) |
Nishimura MT, Stein M, Hou B, Vogel JP, Edwards HH, Somerville SC |
| Citation(s) |
12920300 |
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| Submission date |
May 12, 2003 |
| Last update date |
Aug 28, 2018 |
| Contact name |
Shauna Somerville |
| E-mail(s) |
[email protected]
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| Phone |
650-325-1521
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| URL |
http://carnegiedpb.stanford.edu/research/research_ssomerville.php
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| Organization name |
Carnegie Institution of Washington
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| Department |
Plant Biology
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| Street address |
260 Panama Street
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| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305 |
| Country |
USA |
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| Platforms (1) |
| GPL198 |
[ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array |
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| Samples (16)
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| Relations |
| BioProject |
PRJNA85005 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE431_RAW.tar |
145.3 Mb |
(http)(custom) |
TAR (of CEL, CHP, EXP, RPT) |
| Processed data provided as supplementary file |
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