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Series GSE40560 Query DataSets for GSE40560
Status Public on Oct 28, 2012
Title Transcriptome analysis in primary fibroblasts from HOIL-1-deficient patients upon TNF-α or IL-1β stimulation
Organism Homo sapiens
Experiment type Expression profiling by array
Summary HOIL-1 deficient disease is a new early onset fatal autosomal recessive human disorder charaterized by chronic auto-inflammation, recurrent invasive bacterial infections and progressive muscular amylopectinosis. We studied the effect of TNF-α and IL-1β on transcriptional changes of primary fibroblasts from HOIL-1-, MYD88- and NEMO-deficient patients.
 
Overall design Primary fibroblasts were obtained from HOIL-1, MYD88- and NEMO-deficient patients and healthy donors and stimulated with TNF-α or IL-1β for 2 and 6 hours. RNA were extracted and globin reduced. Labeled cRNA were hybridized to Illumina Human HT-12 Beadchips.
 
Citation(s) 23104095
Submission date Sep 03, 2012
Last update date Aug 13, 2018
Contact name Zhaohui Xu
Organization name St. Jude Children's Research Hospital
Department Infectious Diseases
Street address 262 Danny Thomas Place
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platforms (1)
GPL10558 Illumina HumanHT-12 V4.0 expression beadchip
Samples (54)
GSM996523 C1 Non stimulate (6334175026_A)
GSM996524 C1 Non stimulate (6334175031_J)
GSM996525 C1 IL1 - 2h (6334175040_A)
This SubSeries is part of SuperSeries:
GSE40752 Transcriptional analysis of whole blood, primary fibroblasts, and PBMCs upon TNF-alpha or IL-1beta stimulation from HOIL-1-deficient patients
Relations
BioProject PRJNA174575

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE40560_RAW.tar 26.2 Mb (http)(custom) TAR
GSE40560_non-normalized.txt.gz 15.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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