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Series GSE39250 Query DataSets for GSE39250
Status Public on Oct 30, 2012
Title Increased levels of aneuploidy and deregulation of ploidy controlling genes are associated with maintained cultures of hMSC
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Human mesenchymal stem cells (hMSC) are being successfully evaluated for the treatment of a wide range of pathological conditions, including graft versus host disease (GVHD), bone and cartilage degeneration, complex fistula and myocardial infarction. Many of these clinical trials use hMSC, which have been previously expanded in vitro for 8-12 weeks under pro-oxidative “standard” cell culture conditions. These conditions could have negative effects over genetic stability and promote mutations and chromosomal abnormalities. Our FISH (Fluorescence in situ hybridization) analysis shows that aneuploidy is not unusual phenomenon in conventional cultures of hMSC and that it progressively increases with the passages. We further demonstrate that senescence is linked to transcriptional deregulation of a set of genes that have been previously implicated in cancer and ploidy control. Overexpression of hTERT reversed the deregulation of these ploidy control genes and maintained the basal levels of ploidy even during long-term culture, through its canonical function of telomere elongation and by reducing the levels of oxidative stress. We propose that the high levels of aneuploidy and deregulation of these genes would be relevant biomarkers of senescence in standard cultures of hMSC.
 
Overall design We compared the RNA expression profiles of adipose tissue-derived human mesenchymal stem cells cultured in standard cell culture condition at passages 2 with the same primary cell lines cultured by 21 passages. A total of four independent samples were used.
 
Contributor(s) Estrada JC, Torres Y, Benguría A, Dopazo A, Carrera-Quintanar L, Roche E, Samper E, Bernad A
Citation(s) 23807220
Submission date Jul 11, 2012
Last update date Sep 16, 2019
Contact name Juan C Estrada
E-mail(s) [email protected]
Phone 0034 91 4531200
Fax 0034 91 4531245
Organization name CNIC
Department REGENERATIVE CARDIOLOGY
Street address MELCHOR FERNANDEZ ALMAGRO 3
City MADRID
State/province MADRID
ZIP/Postal code 28029
Country Spain
 
Platforms (1)
GPL6480 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Probe Name version)
Samples (8)
GSM958813 FT34_PASSAGE 2
GSM958814 FT34_PASSAGE21
GSM958815 FT36_PASSAGE 2
Relations
BioProject PRJNA170343

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE39250_RAW.tar 70.4 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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