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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Oct 13, 2011 |
| Title |
HP1a_552.S2 |
| Project |
modENCODE
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| Organism |
Drosophila melanogaster |
| Experiment type |
Genome binding/occupancy profiling by genome tiling array
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| Summary |
modENCODE_submission_3700
This submission comes from a modENCODE project of Gary Karpen. For full list of modENCODE projects, see http://www.genome.gov/26524648
Project Goal: We aim to determine the locations of 125 chromosomal proteins across the Drosophila melanogaster genome. The proteins under study are involved in basic chromosomal functions such as DNA replication, gene expression, gene silencing, and inheritance. We will perform Chromatin ImmunoPrecipitation (ChIP) using genomic tiling arrays. We will initially assay localizations using chromatin from three cell lines and two embryonic stages, and will then extend the analysis of a subset of proteins to four additional animal tissues/stages
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
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| Overall design |
EXPERIMENT TYPE: CHIP-chip. BIOLOGICAL SOURCE: Cell Line: S2-DRSC; Tissue: embryo-derived cell-line; Developmental Stage: late embryonic stage; Sex: Male; NUMBER OF REPLICATES: 4; EXPERIMENTAL FACTORS: Cell Line S2-DRSC; Antibody HP1a 552 (target is HP1a)
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| Web link |
http://www.modencode.org
http://www.ncbi.nlm.nih.gov/geo/info/ENCODE.html
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| Contributor(s) |
Karpen G, Elgin S, Gortchakov A, Shanower G, Tolstorukov M, Kharchenko P, Kuroda M, Pirrotta V, Park P, Minoda A, Riddle N, Schwartz Y, Alekseyenko A, Kennedy C |
| Citation(s) |
21177972 |
| BioProject |
PRJNA63463 |
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| Submission date |
Oct 11, 2011 |
| Last update date |
Jul 08, 2015 |
| Contact name |
DCC modENCODE |
| E-mail(s) |
[email protected]
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| Phone |
416-673-8579
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| Organization name |
Ontario Institute for Cancer Research
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| Lab |
modENCODE DCC
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| Street address |
MaRS Centre, South Tower, 101 College Street, Suite 800
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| City |
Toronto |
| State/province |
Ontario |
| ZIP/Postal code |
M5G 0A3 |
| Country |
Canada |
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| Platforms (1) |
| GPL6629 |
[DM_tiling2_MR] Affymetrix Drosophila Tiling 2.0R Array |
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| Samples (4)
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| Supplementary file |
Size |
Download |
File type/resource |
| GSE32799_1402.Mvalues.bedgraph.gz |
41.3 Mb |
(ftp)(http) |
BEDGRAPH |
| GSE32799_1403.Mvalues.bedgraph.gz |
41.3 Mb |
(ftp)(http) |
BEDGRAPH |
| GSE32799_RAW.tar |
101.5 Mb |
(http)(custom) |
TAR (of CEL) |
| GSE32799_repset.13435395.smoothedM.bedgraph.gz |
41.6 Mb |
(ftp)(http) |
BEDGRAPH |
| GSE32799_repset.13435395.smoothedM.clusters.gff3.gz |
44.3 Kb |
(ftp)(http) |
GFF3 |
| Processed data are available on Series record |
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