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Series GSE31370 Query DataSets for GSE31370
Status Public on Aug 31, 2012
Title Fibrous stromal component in hepatocellular carcinoma reveals a cholangiocarcinoma-like gene expression trait and epithelial-mesenchymal transition.
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Hepatocellular carcinoma (HCC) and cholangiocarcinoma (CC) are the major primary liver cancers in adults. It has been shown the phenotypic overlap between HCC and CC, comprising continuous liver cancer spectrum. As a proof of concept, a recent study has demonstrated a genomic subtype of HCC expressing CC-like gene expression trait, i.e. CC-like HCC, which has revealed common genomic trait of stem cell-like property and aggressive clinical outcome. However, the histopathological characteristics of these intermediate phenotype was not fully evaluated yet. Here, we found that a variant HCC with fibrous stromal component, i.e. scirrhous HCC, has CC-like genomic features. By performing gene expression profiling and immunohistochemical evaluation, we compared the morphological and molecular features of scirrhous HCC with CC and classical HCC. We found that the scirrhous HCC express both CC-like and stem cell-like expression traits. In addition, we observed the expression of core epithelial-mesenchymal transition (EMT)-related genes, which may contribute to the aggressive behavior of scirrhous HCC. Over-expression of transforming growth factor β (TGF-β) signaling was also found, implying its regulatory role in the pathobiology of scirrhous HCC. Conclusion: We suggest that the fibrous stromal component in HCC may contribute to the acquisition of CC-like gene expression trait in HCC. The expression of stem cell-like trait and TGF-β/EMT molecules may play pivotal roles in the aggressive phenotype of scirrhous HCC
 
Overall design Gene expression profiles of HCC, CC and HCC with fibrous stroma were compared.
 
Contributor(s) Seok JY, Na DC, Woo HG, Roncalli M, Kwon SM, Yoo JE, Ahn EY, Kim GI, Choi J, Kim YB, Park YN
Citation(s) 22234953
Submission date Aug 13, 2011
Last update date Aug 13, 2018
Contact name Hyun Goo Woo
E-mail(s) [email protected]
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro Yeongtong-gu
City Suwon
ZIP/Postal code 16499
Country South Korea
 
Platforms (1)
GPL10558 Illumina HumanHT-12 V4.0 expression beadchip
Samples (26)
GSM777740 YS001
GSM777741 YS002
GSM777742 YS003
Relations
BioProject PRJNA145895

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE31370_RAW.tar 26.2 Mb (http)(custom) TAR
GSE31370_non_normalized.txt.gz 7.7 Mb (ftp)(http) TXT
Processed data included within Sample table

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