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Series GSE28097 Query DataSets for GSE28097
Status Public on Jul 25, 2012
Title Histone acetylation in wild-type and SET2 deletion yeast strains
Organism Saccharomyces cerevisiae
Experiment type Genome binding/occupancy profiling by genome tiling array
Summary ChIP-on chip assays to measure the change in histone acetylation over the yeast genome, in a SET2 deleted strain compared to the wild-type control. ChIPs of H3K9ac, H3K56ac and H4K12ac from wild-type and SET2 deleted cells were normalized to the H3 enrichment.
 
Overall design Two color experiment. SET2 deletion vs. WT cells. Biological replicates=3 per IP per cell type.
 
Contributor(s) Venkatesh S, Li H, Workman JL
Citation(s) 22914091
Submission date Mar 22, 2011
Last update date Sep 07, 2013
Contact name Swaminathan Venkatesh
E-mail(s) [email protected]
Phone 816-926-4312
Fax 816-926-4866
Organization name Stowers Institute for Medical Research
Lab Workman Lab
Street address 1000 E 50th Street
City Kansas City
State/province MO
ZIP/Postal code 64112
Country USA
 
Platforms (1)
GPL10930 Agilent-014810 Yeast Whole Genome ChIP-on-Chip Microarray 4x44K (G4493A) [Probe Name version]
Samples (24)
GSM696105 WT H3K9ac IP Replicate 1 (BY4741)
GSM696106 WT H3K9ac IP Replicate 2 (BY4741)
GSM696107 WT H3K9ac IP Replicate 3 (BY4741)
This SubSeries is part of SuperSeries:
GSE28099 Co-transcriptional histone acetylation is a consequence of histone exchange
Relations
BioProject PRJNA141741

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE28097_RAW.tar 309.6 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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