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Series GSE266561 Query DataSets for GSE266561
Status Public on May 08, 2024
Title Overexpressed Malat1 drives metastasis through inflammatory reprogramming of lung adenocarcinoma microenvironment
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Although the expression of some long noncoding RNAs (lncRNAs), including MALAT1 (metastasis-associated lung adenocarcinoma transcript 1), is predictive of metastasis, their impact and mechanism of action remain elusive. Here we use CRISPR activation (CRISPRa) to model MALAT1/Malat1 overexpression in patient-derived lung adenocarcinoma (LUAD) cell lines and in the autochthonous K-ras/p53 LUAD mouse model. The results indicate that Malat1 overexpression alone is sufficient to enable the progression of LUAD to metastatic disease. We show that overexpressed MALAT1/Malat1 enhances cell mobility and promotes the recruitment of pro-tumor macrophages to the tumor microenvironment through paracrine secretion of the CCL2/Ccl2 cytokine. We determine that Ccl2 upregulation results from an increase in global chromatin accessibility upon Malat1 overexpression. Importantly, macrophage depletion and Ccl2 blockade counteracted the effects of Malat1 overexpression. These data demonstrate that a single lncRNA can drive LUAD metastasis through reprogramming of the tumor microenvironment.
 
Overall design Comparative gene expression profiling analysis of RNA-seq data for isolated tumor cells with or without targeted Malat1 overexpression in KP mouse model of lung adenocarcinoma.
 
Contributor(s) Zamudio JR, Dimitrova N
Citation(s) 38875320
Submission date May 03, 2024
Last update date Aug 07, 2024
Contact name Jesse R Zamudio
E-mail(s) [email protected]
Organization name University of California, Los Angeles
Department MCDB
Lab Zamudio
Street address 610 CHARLES E. YOUNG DRIVE EAST BOX 957239
City LOS ANGELES
State/province CA
ZIP/Postal code 90095-7239
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (6)
GSM8250419 TumorCell_GFP+_dTom1
GSM8250420 TumorCell_GFP+_dTom2
GSM8250421 TumorCell_GFP+_dTom3
Relations
BioProject PRJNA1107590

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE266561_ExonCountsDESeq2.txt.gz 1.2 Mb (ftp)(http) TXT
GSE266561_IntronicCountsDESeq2.txt.gz 923.4 Kb (ftp)(http) TXT
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