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Series GSE25167 Query DataSets for GSE25167
Status Public on Nov 01, 2011
Title Transcriptional responses to nanoparticulate matter in human skin-derived cancer cells
Organism Homo sapiens
Experiment type Expression profiling by array
Summary This study evaluated transcriptional effects of particles smaller than 100 nm of TiO2 and ZnO. Based on previous data in colon cancer cells (GSE14910), we evaluated HaCaT and Sk Mel-28 cells for transcriptional responses to 1 and 5 ug/cm2 ZnO, or 5 and 10 ug/cm2 TiO2. No particle controls were also included.
Again, the most pronounced transcriptional response resulted from ZnO treatement with little responses to TiO2. We identified increased protein stress responses, decreased regulation of transcription, and responses to Zn ions. We did not observe the protein stress response and regulation of transcription with soluble Zn.
Keywords: skin-derived cancer cells - response to ZnO nanoparticulate
 
Overall design Two skin-derived cancer cell types (HaCaT and SK Mel-28) were treated with media containing the nanoparticulate, ZnCl2, or ZnO separated from the HaCaTs by a Transwell insert, and RNA was collected after 4 hrs. Generally, the RNA from 4 independent samples were combined for one microarray.
 
Contributor(s) Moos PJ, Leachman S
Citation(s) 21769377
Submission date Nov 05, 2010
Last update date Feb 22, 2018
Contact name Philip J Moos
E-mail(s) [email protected]
Phone 801-585-5952
Organization name University of Utah
Department Pharmacology & Toxicology
Lab Moos
Street address 30 S 2000 East, Rm 201
City Salt Lake City
State/province UT
ZIP/Postal code 84112
Country USA
 
Platforms (1)
GPL4133 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Feature Number version)
Samples (15)
GSM618298 HaCaT_control 1
GSM618299 HaCaT_control 2
GSM618300 HaCaT_ZnO_1ug/cm2
Relations
BioProject PRJNA134425

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE25167_RAW.tar 223.8 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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