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Series GSE239483 Query DataSets for GSE239483
Status Public on Aug 22, 2023
Title Human saliva modifies growth, biofilm architecture and competitive behaviors of oral streptococci
Organisms Streptococcus oralis; Streptococcus mutans
Experiment type Expression profiling by high throughput sequencing
Summary Our group recently transcriptomically characterized coculture growth between Streptococcus mutans and several species of commensal streptococci (Rose et al, 2023). However, these experiments were carried out in our lab-based experimental medium, tryptone and yeast extract (TY-). To understand whether culturing these species within a medium that more closely mimics their natural environment alters the interaction, we evaluated both monoculture and coculture growth between the dental caries pathogen Streptococcus mutans and oral commensal species Streptococcus oralis in a half TY- / half human saliva mix that was optimally chosen based on our initial characterization of oral streptococci behaviors in medium mixes containing saliva. Our results surprising show that inclusion of saliva enhances the competition of Streptococcus mutans against commensal streptococci through upregulation of carbohydrate uptake and glycolytic pathways.
 
Overall design Streptococcus mutans UA159 and Streptococcus oralis 34 were grown either as monocultures or cocultures, inoculated 1:1.
All samples were grown in either TY- (regular lab-based experimental medium) or TY-Saliva (half TY / half human saliva).
Resulting comparisions included differentially expressed genes (DEGs) between TY-Saliva and TY- conditions for each monoculture as well as cocultures.
 
Contributor(s) Kaspar J, Peters D, Choi A, Dong K
Citation(s) 37662325, 38319113
Submission date Jul 27, 2023
Last update date Mar 07, 2024
Contact name Justin Ray Kaspar
E-mail(s) [email protected]
Phone 6142923773
Organization name The Ohio State University
Department Biosciences
Lab Kaspar
Street address 305 W 12th Ave
City Columbus
State/province OH
ZIP/Postal code 43210
Country USA
 
Platforms (3)
GPL24591 NextSeq 550 (Streptococcus mutans)
GPL33629 NextSeq 550 (Streptococcus oralis)
GPL33630 NextSeq 550 (Streptococcus mutans; Streptococcus oralis)
Samples (18)
GSM7666010 Streptococcusmutans_Mono_TYG_Rep1
GSM7666011 Streptococcusmutans_Mono_TYG_Rep2
GSM7666012 Streptococcusmutans_Mono_TYG_Rep3
Relations
BioProject PRJNA999367

Download family Format
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE239483_Smutansrawcounts.csv.gz 82.3 Kb (ftp)(http) CSV
GSE239483_Soralisrawcounts.csv.gz 55.2 Kb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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