NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE237018 Query DataSets for GSE237018
Status Public on Jul 17, 2023
Title Identifying genetic determinants of Streptococcus pyogenes-host interactions in a murine intact skin infection model
Organisms Mus musculus; Streptococcus pyogenes NZ131
Experiment type Expression profiling by high throughput sequencing
Summary Streptococcus pyogenes is an obligate human pathobiont associated with many disease states. Here, we present a novel model of S. pyogenes infection using intact murine epithelium. From this model, we were able to perform RNA sequencing to evaluate the genetic changes undertaken by both the bacterium and host at 5 and 24 hours post infection. Analysis of these genomic data demonstrate that S. pyogenes undergoes significant genetic adaptation to successfully infect the murine epithelium, including changes to metabolism and activation of the Rgg2/Rgg3 quorum sensing (QS) system. Subsequent experiments demonstrate that an intact Rgg2/Rgg3 QS cascade is necessary to establish a stable superficial skin infection. Furthermore, activation of this pathway results in increased murine morbidity and increased bacterial burden on the skin. This phenotype is associated with gross changes to the murine skin, as well as histopathological evidence of inflammation. Taken together, these experiments offer a novel method to investigate S. pyogenes-epithelial interactions and demonstrate that a well-studied QS pathway is critical to a persistent infection.
 
Overall design To investigate gene expression assoicated with infection of intact murine skin by Streptococcus pyogenes, we obtained RNA from both mice and bacterium at 5 and 24 hours after infection. Dual RNAsequencing allowed for comparison of bacterial samples to their input control, as well as murine samples versus their uninfected control.
Web link https://pubmed.ncbi.nlm.nih.gov/37889753/
 
Contributor(s) Wilkening RV, Langouët-Astrié C, Severn MM, Federle MJ, Horswill AR
Citation(s) 37889753
Submission date Jul 10, 2023
Last update date Nov 08, 2023
Contact name Reid V Wilkening
E-mail(s) [email protected]
Organization name University of Colorado
Department Department of Pediatrics, Section of Critical Care Medicine
Lab Horswill Laboratory
Street address 12800 E. 19th Ave., Rm. P18-9101
City Aurora
State/province CO
ZIP/Postal code 80045
Country USA
 
Platforms (3)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL33561 Illumina HiSeq 2000 (Streptococcus pyogenes NZ131)
GPL33562 Illumina HiSeq 2000 (Mus musculus; Streptococcus pyogenes NZ131)
Samples (11)
GSM7593084 NZ131 Input 1
GSM7593085 NZ131 Input 2
GSM7593086 NZ131 Input 3
Relations
BioProject PRJNA993365

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE237018_Murine_All.xlsx 20.8 Mb (ftp)(http) XLSX
GSE237018_NZ131_All.xlsx 1.1 Mb (ftp)(http) XLSX
GSE237018_NZ_Mouse_24hr_results.csv.gz 1.0 Mb (ftp)(http) CSV
GSE237018_NZ_Mouse_5hr_results.csv.gz 1.1 Mb (ftp)(http) CSV
GSE237018_NZ_bacteria_24hr_results.csv.gz 100.3 Kb (ftp)(http) CSV
GSE237018_NZ_bacteria_5hr_results.csv.gz 69.5 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap