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| Status |
Public on Aug 10, 2010 |
| Title |
H3K9acS10P (new lot).BG3 |
| Project |
modENCODE
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| Organism |
Drosophila melanogaster |
| Experiment type |
Genome binding/occupancy profiling by genome tiling array
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| Summary |
modENCODE_submission_2659
This submission comes from a modENCODE project of Gary Karpen. For full list of modENCODE projects, see http://www.genome.gov/26524648
Project Goal: We aim to determe the locations of 125 chromosomal proteins and histone modifications across the Drosophila melanogaster genome. The proteins and modifications under study are involved in basic chromosomal functions such as DNA replication, gene expression, gene silencing, and inheritance. We will perform Chromatin ImmunoPrecipitation (ChIP) using genomic tiling arrays. We will initially assay localizations using chromatin from three cell lines and two embryonic stages, and will then extend the analysis of a subset of proteins to four additional animal tissues/stages.
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
Keywords: CHIP-chip
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| Overall design |
EXPERIMENT TYPE: CHIP-chip. BIOLOGICAL SOURCE: Cell Line: ML-DmBG3-c2; Tissue: CNS-derived cell-line; Developmental Stage: third instar larval stage; Genotype: y v f mal; Sex: Unknown; NUMBER OF REPLICATES: 5; EXPERIMENTAL FACTORS: Cell Line ML-DmBG3-c2; Antibody H3K9acS10P (new lot) (target is H3K9acS10P)
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| Web link |
http://www.ncbi.nlm.nih.gov/geo/info/ENCODE.html
http://www.modencode.org
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| Contributor(s) |
Karpen G, Elgin S, Gortchakov A, Shanower G, Tolstorukov M, Kharchenko P, Kuroda M, Pirrotta V, Park P, Minoda A, Riddle N, Schwartz Y, Alekseyenko A, Kennedy C |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| BioProject |
PRJNA63467 |
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| Submission date |
Aug 06, 2010 |
| Last update date |
Jul 08, 2015 |
| Contact name |
DCC modENCODE |
| E-mail(s) |
[email protected]
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| Phone |
416-673-8579
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| Organization name |
Ontario Institute for Cancer Research
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| Lab |
modENCODE DCC
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| Street address |
MaRS Centre, South Tower, 101 College Street, Suite 800
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| City |
Toronto |
| State/province |
Ontario |
| ZIP/Postal code |
M5G 0A3 |
| Country |
Canada |
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| Platforms (1) |
| GPL6629 |
[DM_tiling2_MR] Affymetrix Drosophila Tiling 2.0R Array |
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| Samples (5)
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| GSM575437 |
Cell Line ML-DmBG3-c2;Antibody H3K9acS10P (new lot) (target is H3K9acS10P) extraction1_array1 |
| GSM575438 |
Cell Line ML-DmBG3-c2;Antibody H3K9acS10P (new lot) (target is H3K9acS10P) extraction2_array1 |
| GSM575439 |
Cell Line ML-DmBG3-c2;Antibody H3K9acS10P (new lot) (target is H3K9acS10P) extraction3_array1 |
| GSM575440 |
Cell Line ML-DmBG3-c2;Antibody H3K9acS10P (new lot) (target is H3K9acS10P) extraction4_array1 |
| GSM575441 |
Cell Line ML-DmBG3-c2;Antibody H3K9acS10P (new lot) (target is H3K9acS10P) extraction5_array1 |
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| Supplementary file |
Size |
Download |
File type/resource |
| GSE23474_RAW.tar |
265.1 Mb |
(http)(custom) |
TAR (of BEDGRAPH, CEL) |
| GSE23474_repset.9273877.smoothedM.bedgraph.gz |
41.7 Mb |
(ftp)(http) |
BEDGRAPH |
| GSE23474_repset.9273877.smoothedM.clusters.gff3.gz |
59.4 Kb |
(ftp)(http) |
GFF3 |
| Processed data are available on Series record |
| Processed data provided as supplementary file |
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