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| Status |
Public on Feb 23, 2024 |
| Title |
Tet-dependent 5-hydroxymethyl-Cytosine modification of mRNA regulates axon guidance genes in Drosophila |
| Organism |
Drosophila melanogaster |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Web link |
https://doi.org/10.1371/journal.pone.0293894
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| Citation(s) |
38381741 |
| NIH grant(s) |
| Grant ID |
Grant title |
Affiliation |
Name |
| R01 GM120405 |
RNA processing in Drosophila development |
RUTGERS, THE STATE UNIVERSITY OF NEW JERSEY |
Ruth M Steward |
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| Submission date |
Feb 23, 2023 |
| Last update date |
Feb 24, 2024 |
| Contact name |
Ruth Steward |
| E-mail(s) |
[email protected]
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| Phone |
+1-848-445-3918
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| Organization name |
Rutgers University
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| Department |
Waksman Institute of Microbiology
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| Street address |
190 Frelinghuysen Rd
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| City |
Piscataway |
| State/province |
New Jersey |
| ZIP/Postal code |
08854 |
| Country |
USA |
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| Platforms (3) |
| GPL16479 |
Illumina MiSeq (Drosophila melanogaster) |
| GPL19132 |
Illumina NextSeq 500 (Drosophila melanogaster) |
| GPL19806 |
Illumina HiScanSQ (Drosophila melanogaster) |
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| Samples (16)
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| GSM7061118 |
w1118 (wild-type), 0-12h Embryo, Rep1 |
| GSM7061119 |
Tet-GFP, LBF (third instar larva brain fraction) |
| GSM7061120 |
w1118 (wild-type), LBF (third instar larva brain fraction) |
| GSM7061219 |
hMeRIP, WT, 0-12h Embryo |
| GSM7061220 |
Input, WT, 0-12h Embryo |
| GSM7061221 |
hMeRIP, WT, LBF, rep1 |
| GSM7061222 |
hMeRIP, WT, LBF, rep2 |
| GSM7061223 |
Input, WT, LBF, rep1 |
| GSM7061224 |
Input, WT, LBF, rep2 |
| GSM7061225 |
hMeRIP, Tetnull, LBF, rep1 |
| GSM7061226 |
hMeRIP, Tetnull, LBF, rep2 |
| GSM7061227 |
Input, WT, Tetnull, rep1 |
| GSM7061228 |
Input, WT, Tetnull, rep2 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE225969 |
Tet-dependent 5-hydroxymethyl-Cytosine modification of mRNA regulates the axon guidance genes robo2 and slit in Drosophila [ChIP Embryo] |
| GSE225970 |
Tet-dependent 5-hydroxymethyl-Cytosine modification of mRNA regulates the axon guidance genes robo2 and slit in Drosophila [ChIP LBF] |
| GSE225979 |
Tet-dependent 5-hydroxymethyl-Cytosine modification of mRNA regulates the axon guidance genes robo2 and slit in Drosophila [hMeRIP] |
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| Relations |
| BioProject |
PRJNA938136 |
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