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Series GSE221085 Query DataSets for GSE221085
Status Public on Dec 31, 2023
Title Intrinsic innate immunostimulation by small circRNA vaccines [tumor]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Various RNAs have been shown to elicit innate immunity by activating endosomal PRRs such as Toll-like receptors 3/7/8 (TLR3/7/8), and cytosolic PRRs (e.g., retinoic acid-inducible gene I (RIG-I), melanoma differentiation-associated protein 5 (MDA5)). Such innate immunity provides cytokines and co-stimulation signals that are essential for adaptive immunomodulation.
 
Overall design We further employed RNA-seq genome-wide transcriptome analysis for the comprehensive understanding of the immunomodulation mechanisms by small circRNA vaccines in BMDCs or tumor tissues.
 
Contributor(s) Zhang Y, Zhu G, Liu J, Tyc KM
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Dec 15, 2022
Last update date Dec 31, 2023
Contact name Guizhi Zhu
Organization name Virginia Commonwealth University
Street address 410 N 12th St
City Richmond
State/province VA
ZIP/Postal code 23298
Country USA
 
Platforms (1)
GPL30172 NextSeq 2000 (Mus musculus)
Samples (9)
GSM6843179 tumor treated with PBS replicate 1
GSM6843180 tumor treated with PBS replicate 2
GSM6843181 tumor treated with PBS replicate 3
This SubSeries is part of SuperSeries:
GSE221087 circRNA vaccines
Relations
BioProject PRJNA912728

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE221085_tumor_featureCounts.txt.gz 4.2 Mb (ftp)(http) TXT
GSE221085_tumor_filtered_counts.csv.gz 372.0 Kb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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