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GEO accession:
Series GSE217807
Query DataSets for GSE217807
Status
Public on Apr 06, 2024
Title
ARID1A suppresses R-loop mediated STING-Type I Interferon pathway activation of anti-tumor immunity
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
38754421
Submission date
Nov 11, 2022
Last update date
May 27, 2024
Contact name
Diana C. Hargreaves
E-mail(s)
[email protected]
Organization name
The Salk Institute for Biological Studies
Street address
10010 North Torrey Pines Road
City
San Diego
State/province
CA
ZIP/Postal code
92037
Country
USA
Platforms (2)
GPL21103
Illumina HiSeq 4000 (Mus musculus)
GPL30172
NextSeq 2000 (Mus musculus)
Samples (62)
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GSM6726996
sgScr_ATAC_rep1
GSM6726997
sgScr_ATAC_rep2
GSM6726998
sgArid1a_ATAC_rep1
GSM6726999
sgArid1a_ATAC_rep2
GSM6727000
WT_MEFs_STAT1_ChIP_Seq
GSM6727001
WT_MEFs_STAT2_ChIP_Seq
GSM6727002
WT_MEFs_IRF9_ChIP_Seq
GSM6727003
Arid1a_KO_MEFs_STAT1_ChIP_Seq
GSM6727004
Arid1a_KO_MEFs_STAT2_ChIP_Seq
GSM6727005
Arid1a_KO_MEFs_IRF9_ChIP_Seq
GSM6727006
WT_input_ChIP_Seq
GSM6727007
sgScr_CD8_T_cell_scRNA_rep1
GSM6727008
sgScr_CD8_T_cell_scRNA_rep2
GSM6727009
sgArid1a_CD8_T_cell_scRNA_rep1
GSM6727010
sgArid1a_CD8_T_cell_scRNA_rep2
GSM7981832
sgScr_B16F10_tumor_rep1_RNAseq
GSM7981833
sgScr_B16F10_tumor_rep2_RNAseq
GSM7981834
sgArid1a_B16F10_tumor_rep1_RNAseq
GSM7981835
sgArid1a_B16F10_tumor_rep2_RNAseq
GSM7981836
sgScr_PBS_B16F10_rep1_RNAseq
GSM7981837
sgScr_PBS_B16F10_rep2_RNAseq
GSM7981838
sgArid1a_PBS_B16F10_rep1_RNAseq
GSM7981839
sgArid1a_PBS_B16F10_rep2_RNAseq
GSM7981840
sgScr_IFNg_B16F10_rep1_RNAseq
GSM7981841
sgScr_IFNg_B16F10_rep2_RNAseq
GSM7981842
sgArid1a_IFNg_B16F10_rep1_RNAseq
GSM7981843
sgArid1a_IFNg_B16F10_rep2_RNAseq
GSM7981844
sgScr_B16F10_rep1_RNAseq
GSM7981845
sgScr_B16F10_rep2_RNAseq
GSM7981846
sgArid1a_B16F10_rep1_RNAseq
GSM7981847
sgArid1a_B16F10_rep2_RNAseq
GSM7981848
Cgas_dKO_B16F10_rep1_RNAseq
GSM7981849
Cgas_dKO_B16F10_rep2_RNAseq
GSM7981850
Sting_dKO_B16F10_rep1_RNAseq
GSM7981851
Sting_dKO_B16F10_rep2_RNAseq
GSM7981852
sgArid1a_anti_IFNAR_B16F10_rep1_RNAseq
GSM7981853
sgArid1a_anti_IFNAR_B16F10_rep2_RNA_seq
GSM7981854
sgScr_DMSO_JAKi_exp_B16F10_rep1_RNAseq
GSM7981855
sgScr_DMSO_JAKi_exp_B16F10_rep2_RNAseq
GSM7981856
sgArid1a_DMSO_B16F10_rep1_RNAseq
GSM7981857
sgArid1a_DMSO_B16F10_rep2_RNAseq
GSM7981858
sgArid1a_Ruxolitinib_B16F10_rep1_RNAseq
GSM7981859
sgArid1a_Ruxolitinib_B16F10_rep2_RNAseq
GSM7981860
DMSO_B16F10_BD98_exp_rep1_RNAseq
GSM7981861
DMSO_B16F10_BD98_exp_rep2_RNAseq
GSM7981862
BD98_B16F10_rep1_RNAseq
GSM7981863
BD98_B16F10_rep2_RNAseq
GSM7981864
BD98_anti_IFNAR_B16F10_rep1_RNAseq
GSM7981865
BD98_anti_IFNAR_B16F10_rep2_RNAseq
GSM7981866
sgScr_MC38_rep1_RNAseq
GSM7981867
sgScr_MC38_rep2_RNAseq
GSM7981868
sgArid1a_MC38_rep1_RNAseq
GSM7981869
sgArid1a_MC38_rep2_RNAseq
GSM7981870
WT_MEFs_rep1_RNAseq
GSM7981871
WT_MEFs_rep2_RNAseq
GSM7981872
Arid1a_KO_MEFs_rep1_RNAseq
GSM7981873
Arid1a_KO_MEFs_rep2_RNAseq
GSM7981874
Total_RNA_seq_sgScr_B16F10_rep1
GSM7981875
Total_RNA_seq_sgScr_B16F10_rep2
GSM7981876
Total_RNA_seq_sgArid1a_B16F10_rep1
GSM7981877
Total_RNA_seq_sgArid1a_B16F10_rep2
GSM8199240
Arid1a_KO_input_ChIP_Seq
This SuperSeries is composed of the following SubSeries:
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More...
GSE217803
ARID1A suppresses R-loop mediated STING-Type I Interferon pathway activation of anti-tumor immunity (RNA-Seq)
GSE217804
ARID1A suppresses R-loop mediated STING-Type I Interferon pathway activation of anti-tumor immunity (ATAC-Seq)
GSE217805
ARID1A suppresses R-loop mediated STING-Type I Interferon pathway activation of anti-tumor immunity (ChIP-Seq)
GSE217806
ARID1A suppresses R-loop mediated STING-Type I Interferon pathway activation of anti-tumor immunity (scRNA/TCR-seq)
Relations
BioProject
PRJNA900585
Download family
Format
SOFT formatted family file(s)
SOFT
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Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE217807_RAW.tar
2.3 Gb
(http)
(custom)
TAR (of BEDGRAPH, BROADPEAK, MTX, TSV, TXT)
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