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GEO accession:
Series GSE217639
Query DataSets for GSE217639
Status
Public on Sep 19, 2024
Title
Effect of ZIC1 on group 3 medulloblastoma cell lines and granule neuron progenitor
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation missing
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Submission date
Nov 09, 2022
Last update date
Sep 20, 2024
Contact name
Michael D Taylor
E-mail(s)
[email protected]
Organization name
Hospital for Sick Children
Street address
686 Bay St.
City
Toronto
State/province
ON
ZIP/Postal code
M5G 0A4
Country
Canada
Platforms (4)
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GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
GPL30172
NextSeq 2000 (Mus musculus)
Samples (49)
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GSM6721862
ATOH1_GFP_RNA_mch_bulk_rep1
GSM6721863
ATOH1_GFP_RNA_mch_bulk_rep2
GSM6721864
ATOH1_GFP_RNA_mch_sort_rep1
GSM6721865
ATOH1_GFP_RNA_mch_sort_rep2
GSM6721866
ATOH1_GFP_RNA_ZIC1_bulk_rep1
GSM6721867
ATOH1_GFP_RNA_ZIC1_bulk_rep2
GSM6721868
ATOH1_GFP_RNA_ZIC1_sort_rep1
GSM6721869
ATOH1_GFP_RNA_ZIC1_sort_rep2
GSM6721871
D283_ev1_ZIC1_mut_constructs_RNA
GSM6721872
D283_ev2_ZIC1_mut_constructs_RNA
GSM6721873
D283_P301S_ZIC1_mut_constructs_RNA
GSM6721874
D283_R294C_ZIC1_mut_constructs_RNA
GSM6721875
D283_S399F_ZIC1_mut_constructs_RNA
GSM6721876
D283_S403F_ZIC1_mut_constructs_RNA
GSM6721877
D283_WT1_ZIC1_mut_constructs_RNA
GSM6721878
D283_WT2_ZIC1_mut_constructs_RNA
GSM6721879
D425_ev1_ZIC1_mut_constructs_RNA
GSM6721880
D425_ev2_ZIC1_mut_constructs_RNA
GSM6721881
D425_P301S_ZIC1_mut_constructs_RNA
GSM6721882
D425_R294C_ZIC1_mut_constructs_RNA
GSM6721883
D425_RNA_BFP1
GSM6721884
D425_RNA_BFP2
GSM6721885
D425_RNA_BFP3
GSM6721886
D425_RNA_ZIC1_4_1
GSM6721887
D425_RNA_ZIC1_4_2
GSM6721888
D425_RNA_ZIC1_4_3
GSM6721889
D425_S399F_ZIC1_mut_constructs_RNA
GSM6721890
D425_S403F_ZIC1_mut_constructs_RNA
GSM6721891
D425_WT1_ZIC1_mut_constructs_RNA
GSM6721892
D425_WT2_ZIC1_mut_constructs_RNA
GSM6723638
D283_ZIC1NF_294_IP
GSM6723639
D283_ZIC1NF_301_IP
GSM6723640
D283_ZIC1NF_WT1_IP
GSM6723641
D283_ZIC1NF_WT2_IP
GSM8073637
GNP_ZIC1NF_no_virus_IP
GSM8073638
GNP_ZIC1NF_301_IP_1
GSM8073639
GNP_ZIC1NF_301_IP_2
GSM8073640
GNP_ZIC1NF_294_IP
GSM8073641
GNP_ZIC1NF_WT1_IP_1
GSM8073642
GNP_ZIC1NF_WT1_IP_2
GSM8501021
MB051_BFP_1_RNA
GSM8501022
MB051_BFP_2_RNA
GSM8501023
MB051_BFP_3_RNA
GSM8501024
MB051_ZIC_1/4_1_RNA
GSM8501025
MB051_ZIC_1/4_2_RNA
GSM8501026
MB051_ZIC_1/4_3_RNA
GSM8501035
MB051_Xeno_27Ac
GSM8501036
MB051_Xeno_27me3
GSM8501037
MB051_Xeno_inp
This SuperSeries is composed of the following SubSeries:
GSE217571
Effect of ZIC1 on group 3 medulloblastoma cell lines and granule neuron progenitor [RNA-seq]
GSE217638
Effect of ZIC1 on group 3 medulloblastoma cell lines and granule neuron progenitor [ChIP-seq]
Relations
BioProject
PRJNA899864
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE217639_RAW.tar
2.1 Mb
(http)
(custom)
TAR (of BROADPEAK, NARROWPEAK)
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