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Series GSE216219 Query DataSets for GSE216219
Status Public on Oct 20, 2022
Title mouse prostate and urethra Visium analysis
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We performed spatial RNA-Seq of prostate and urethra tissues from C57Bl/6 wild type mice. Downstream analyses demonstrated that Foxf2 is highly expressed in the mouse proximal prostate as compaired to the distal ducts.
 
Overall design This experiment is to define gene expression in mouse prostate and urethra using the Visium platform.
 
Contributor(s) Xin L, Regier MC, Jia D, Kwon O
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Submission date Oct 20, 2022
Last update date Oct 23, 2022
Contact name Li Xin
E-mail(s) [email protected]
Organization name University of Washington
Department Department of Urology
Street address 850 Republican Street Rm N326
City SEATTLE
State/province WA
ZIP/Postal code 98109
Country USA
 
Platforms (1)
GPL30172 NextSeq 2000 (Mus musculus)
Samples (4)
GSM6661660 mouse prostate and urethra spatial expression sample 1 replicate 1
GSM6661661 mouse prostate and urethra spatial expression sample 1 replicate 2
GSM6661662 mouse prostate and urethra spatial expression sample 2 replicate 1
Relations
BioProject PRJNA892612

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE216219_RAW.tar 41.5 Mb (http)(custom) TAR (of MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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