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Series GSE211480 Query DataSets for GSE211480
Status Public on Aug 24, 2022
Title An Adaptive Response through N6-Methyladenosine in Fetal Offspring following Gestational Nano-TiO2 Inhalation Exposure II
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Background: N6-methyladenosine (m6A) is the most prominent epitranscriptomic modification to RNA in eukaryotes, but it’s role in adaptive changes within the gestational environment are poorly understood. Nano titanium dioxide (TiO2) exposure is common during pregnancy, though the impact fetal progeny is not entirely understood. We propose that gestational exposure to nano-TiO2 contributes to cardiac m6A methylation in fetal offspring and indirectly contributes to mitochondrial dysfunction.
 
Overall design Results: 10-week-old pregnant female FVB/NJ wild type mice (n=14) on gestational day (GD) 5 underwent 6 non-consecutive days of whole-body inhalation exposure. Mice were exposed to filtered room air or nano-TiO2 with a target aerosol mass concentration of 12 mg/m3. At GD 15 mice were sacrificed and cardiac RNA and mitochondrial proteins extracted. There were no differences in maternal or fetal pup weights, number of pups, or pup heart weight between exposure and control groups. Immunoprecipitation with m6A antibodies was performed followed by sequencing of immunoprecipitant (m6A) and input (mRNA) on the Illumina NextSeq 2000.
 
Contributor(s) Hathaway Q, Kunovac A
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Submission date Aug 17, 2022
Last update date Aug 26, 2022
Contact name Quincy Alexander Hathaway
E-mail(s) [email protected]
Phone 724-255-4637
Organization name West Virginia University
Street address 1 Medical Center Drive
City Morgantown
State/province WV
ZIP/Postal code 26506
Country USA
 
Platforms (1)
GPL30172 NextSeq 2000 (Mus musculus)
Samples (6)
GSM6473436 Wildtype, Sham Exposure, Fetal – 1
GSM6473437 Wildtype, Sham Exposure, Fetal – 2
GSM6473438 Wildtype, Sham Exposure, Fetal – 3
This SubSeries is part of SuperSeries:
GSE211481 An Adaptive Response through N6-Methyladenosine in Fetal Offspring following Gestational Nano-TiO2 Inhalation Exposure
Relations
BioProject PRJNA870483

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE211480_Input_Reads_Normalized.csv.gz 31.7 Mb (ftp)(http) CSV
GSE211480_RAW.tar 9.4 Mb (http)(custom) TAR (of SF)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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