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Series GSE197914 Query DataSets for GSE197914
Status Public on May 26, 2022
Title Ectopic histone modification in extra-embryonic tissues influence implantation and placenta development of IVF embryos [RNA-Seq 3]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary To further investigate the relationship between abnormal accumulation of H3K4me3 modification and abnormal embryo development. We injected Kdm5b siRNA, which is an H3K4me3 eraser, at the zygote (PN3-PN4) stage of NM embryos and then examined the transcriptome of extraembryonic ectoderm at E7.5.
 
Overall design Examination of the transcriptome of extraembryonic ectoderm with sikdm5b or water.
 
Contributor(s) Bai D
Citation(s) 35508139
Submission date Mar 04, 2022
Last update date May 26, 2022
Contact name Jin Sun
E-mail(s) [email protected]
Organization name Tongji University
Department life science and technology
Lab Jiang
Street address siping1239
City shanghai
ZIP/Postal code 200092
Country China
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (4)
GSM5932304 RNA_kdm5bsi_E7.5_ExE_1
GSM5932305 RNA_kdm5bsi_E7.5_ExE_2
GSM5932306 RNA_kdm5bcontrol_E7.5_ExE_1
This SubSeries is part of SuperSeries:
GSE168274 Ectopic histone modification in extra-embryonic tissues influence implantation and placenta development of IVF embryos
Relations
BioProject PRJNA812872

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE197914_kdm5b_si_control_counts.txt.gz 211.3 Kb (ftp)(http) TXT
GSE197914_kdm5b_si_control_exp.txt.gz 471.8 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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