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Series GSE190703 Query DataSets for GSE190703
Status Public on Apr 28, 2022
Title Porphyromonas gingivalis tyrosine kinase is a fitness determinant in polymicrobial infections
Organism Porphyromonas gingivalis
Experiment type Other
Summary Tn-Seq was used to identify P. gingivalis genes that confer fitness during cooperative growth with S. gordonii or F. nucleatum in a murine abscess model.
 
Overall design After generating a saturating Porphyromonas gingivalis transposon library using Mariner-based transposon mutagenesis, this library was inoculated either alone (Pg) or in conjunction with Streptococuus gordonii (Sg) or with Fusobacterium nucleatum (Fn) subcutaneously into BALB/cJ mice. Bacteria recovered from developed abscesses were cultured in vitro for two passages and genomic DNA was isolated. Genomic DNA was also isolated from the P. gingivalis transposon library (Input) and was not used to infect mice and used as a control.
 
Contributor(s) Perpich JD, Yakoumatos L, Stocke KS, Lamont RJ
Citation(s) 35575504
Submission date Dec 11, 2021
Last update date Aug 03, 2022
Contact name Richard Lamont
E-mail(s) [email protected]
Organization name University of Louisville
Department Oral Immunology and Infectious Diseases
Street address 501 S. Preston St
City Louisville
State/province Kentucky
ZIP/Postal code 40292
Country USA
 
Platforms (1)
GPL28580 Illumina NextSeq 500 (Porphyromonas gingivalis)
Samples (20)
GSM5729343 Input_1
GSM5729344 Input_2
GSM5729345 Input_3
Relations
BioProject PRJNA788126

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE190703_RAW.tar 160.0 Kb (http)(custom) TAR (of TXT)
GSE190703_htseq_rawCounts.txt.gz 40.8 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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