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GEO accession:
Series GSE185132
Query DataSets for GSE185132
Status
Public on Aug 15, 2022
Title
EWS/FLI mediated reprogramming of 3D chromatin promotes an altered transcriptional state in Ewing sarcoma
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Third-party reanalysis
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
36124657
Submission date
Sep 30, 2021
Last update date
Oct 26, 2022
Contact name
Iftekhar Ahmed Showpnil
E-mail(s)
[email protected]
Organization name
Nationwide Children's Hospital
Department
CCCBD
Lab
Lessnick
Street address
700 Childrens Drive
City
Columbus
State/province
OH
ZIP/Postal code
43205
Country
USA
Platforms (2)
GPL20301
Illumina HiSeq 4000 (Homo sapiens)
GPL22790
Illumina MiniSeq (Homo sapiens)
Samples (60)
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GSM5606798
A673-EWS/FLI-Endo-HiC 1
GSM5606799
A673-EWS/FLI-Endo-HiC 2
GSM5606800
A673-EWS/FLI-KD-HiC 1
GSM5606801
A673-EWS/FLI-KD-HiC 2
GSM5606802
A673-EWS/FLI-Rescue-HiC 1
GSM5606803
A673-EWS/FLI-Rescue-HiC 2
GSM5606804
A673-EWS/FLI-CUT&Tag 1
GSM5606805
A673-EWS/FLI-CUT&Tag 2
GSM5606806
A673-Rb-IgG-CUT&Tag 1
GSM5606807
A673-Rb-IgG-CUT&Tag 2
GSM5606808
TC71-EWS/FLI-CUT&Tag 1
GSM5606809
TC71-EWS/FLI-CUT&Tag 2
GSM5606810
TC71-Rb-IgG-CUT&Tag 1
GSM5606811
TC71-Rb-IgG-CUT&Tag 2
GSM5606812
EWS502-EWS/FLI-CUT&Tag 1
GSM5606813
EWS502-EWS/FLI-CUT&Tag 2
GSM5606814
EWS502-Rb-IgG-CUT&Tag 1
GSM5606815
EWS502-Rb-IgG-CUT&Tag 2
GSM5606816
SKNMC-EWS/FLI-CUT&Tag 1
GSM5606817
SKNMC-EWS/FLI-CUT&Tag 2
GSM5606818
SKNMC-Rb-IgG-CUT&Tag 1
GSM5606819
SKNMC-Rb-IgG-CUT&Tag 2
GSM5606820
TTC466-EWS/ERG-CUT&Tag 1
GSM5606821
TTC466-EWS/ERG-CUT&Tag 2
GSM5606822
TTC466-Rb-IgG-CUT&Tag 1
GSM5606823
TTC466-Rb-IgG-CUT&Tag 2
GSM5606824
A673-EFEndo-CTCF-CUT&Tag 1
GSM5606825
A673-EFEndo-CTCF-CUT&Tag 2
GSM5606826
A673-EFEndo-Rabbit-IgG-CUT&Tag 1
GSM5606827
A673-EFEndo-Rabbit-IgG-CUT&Tag 2
GSM5606828
A673-EFKD-CTCF-CUT&Tag 1
GSM5606829
A673-EFKD-CTCF-CUT&Tag 2
GSM5606830
A673-EFKD-Rabbit-IgG-CUT&Tag 1
GSM5606831
A673-EFKD-Rabbit-IgG-CUT&Tag 2
GSM5606832
A673-EFRescue-CTCF-CUT&Tag 1
GSM5606833
A673-EFRescue-CTCF-CUT&Tag 2
GSM5606834
A673-EFRescue-Rabbit-IgG-CUT&Tag 1
GSM5606835
A673-EFRescue-Rabbit-IgG-CUT&Tag 2
GSM5606836
TC71-EFEndo-CTCF-CUT&Tag 1
GSM5606837
TC71-EFEndo-CTCF-CUT&Tag 2
GSM5606838
TC71-EFEndo-Rabbit-IgG-CUT&Tag 1
GSM5606839
TC71-EFEndo-Rabbit-IgG-CUT&Tag 2
GSM5606840
TC71-EFKD-CTCF-CUT&Tag 1
GSM5606841
TC71-EFKD-CTCF-CUT&Tag 2
GSM5606842
TC71-EFKD-Rabbit-IgG-CUT&Tag 1
GSM5606843
TC71-EFKD-Rabbit-IgG-CUT&Tag 2
GSM5606858
TC71-EFEndo-RNAseq 1
GSM5606859
TC71-EFEndo-RNAseq 2
GSM5606860
TC71-EFKD-RNAseq 1
GSM5606861
TC71-EFKD-RNAseq 2
GSM5606874
A673-EF-Endo-NKX2-2-rep1
GSM5606875
A673-EF-Endo-NKX2-2-rep2
GSM5606876
A673-EF-KD-NKX2-2-rep1
GSM5606877
A673-EF-KD-NKX2-2-rep2
GSM5606878
A673-EF-Rescue-NKX2-2-rep1
GSM5606879
A673-EF-Rescue-NKX2-2-rep2
GSM5606880
TC71-EF-Endo-NKX2-2-rep1
GSM5606881
TC71-EF-Endo-NKX2-2-rep2
GSM5606882
TC71-EF-KD-NKX2-2-rep1
GSM5606883
TC71-EF-KD-NKX2-2-rep2
This SuperSeries is composed of the following SubSeries:
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GSE185125
EWS/FLI mediated reprogramming of 3D chromatin promotes an altered transcriptional state in Ewing sarcoma (Hi-C)
GSE185126
EWS/FLI mediated reprogramming of 3D chromatin promotes an altered transcriptional state in Ewing sarcoma (CuT&Tag I)
GSE185127
EWS/FLI mediated reprogramming of 3D chromatin promotes an altered transcriptional state in Ewing sarcoma (CUT&Tag II)
GSE185128
EWS/FLI mediated reprogramming of 3D chromatin promotes an altered transcriptional state in Ewing sarcoma (Cut&Tag III)
GSE185130
EWS/FLI mediated reprogramming of 3D chromatin promotes an altered transcriptional state in Ewing sarcoma (RNA-Seq)
GSE185131
EWS/FLI mediated reprogramming of 3D chromatin promotes an altered transcriptional state in Ewing sarcoma (4C)
Relations
BioProject
PRJNA767691
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