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| Status |
Public on Jan 01, 2010 |
| Title |
Arabidopsis transcriptome changes caused by ectopic production of a turtle riboflavin-binding protein |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by array
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| Summary |
Leaf contents of free riboflavin were modulated by ectopic expression of the turtle gene encoding riboflavin-binding protein (RfBP). Compared to Arabidopsis thaliana (L.) ecotype Col-0 (wild type), REAT (modified type) that constitutive express RfBP had 71%-77% less flavins of free form.
We used microarray to investigate the influence on plants due to the reduced free flavin. One modified line (REAT11) and wild type (WT) were tested by microarray, and the experiments data revealed that abundance of transcripts for 950 genes in REAT was altered compared to the wild type.
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| Overall design |
Four samples were analyzed. Two WT and two REAT11 biological replicates were analyzed (one array each).
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| Contributor(s) |
Zhang S, Deng S, Dong H |
| Citation(s) |
25547226 |
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| Submission date |
Oct 05, 2009 |
| Last update date |
Jun 12, 2017 |
| Contact name |
Hansong Dong |
| E-mail(s) |
[email protected]
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| Organization name |
Nanjing Agricultural University
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| Department |
Plant Pathology
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| Lab |
Plant growth and defence
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| Street address |
Weigang NO.1
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| City |
Nanjing |
| ZIP/Postal code |
210095 |
| Country |
China |
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| Platforms (1) |
| GPL198 |
[ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array |
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| Samples (4)
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| Relations |
| BioProject |
PRJNA118211 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE18417_RAW.tar |
8.4 Mb |
(http)(custom) |
TAR (of CEL, CHP) |
| GSE18417_REAT11vsWTrep1.xls.gz |
8.9 Mb |
(ftp)(http) |
XLS |
| GSE18417_REAT11vsWTrep2.xls.gz |
8.9 Mb |
(ftp)(http) |
XLS |
| Processed data included within Sample table |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
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