NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE18051 Query DataSets for GSE18051
Status Public on Sep 09, 2010
Title Functional redundancy of iron acquisition systems is required for Proteus mirabilis pathogenesis during UTI
Organism Proteus mirabilis HI4320
Experiment type Expression profiling by array
Summary Proteus mirabilis is a primary cause of complicated urinary tract infections (UTI). Surprisingly, iron acquisition systems have been poorly characterized in this uropathogen despite the urinary tract being iron-limited. In this report the transcriptome of strain HI4320, cultured under iron limitation, was examined using microarray analysis. Of genes upregulated at least 2-fold, 45 were statistically significant and comprise 21 putative iron-regulated systems. Two of these systems, PMI0229-0239 and PMI2596-2605, are organized in operons and appear to encode siderophore biosynthesis genes.
 
Overall design Five microarrays comparing P. mirabilis HI4320 cultured in LB broth to P. mirabilis cultured in LB broth + 15 uM Desferal (an iron chelator) were analyzed. All five arrays are biological replicates; arrays #2 and 4 are dye swaps.
 
Contributor(s) Himpsl SD, Pearson MM, Mobley HL
Citation(s) 20923418
Submission date Sep 09, 2009
Last update date Mar 21, 2012
Contact name Melanie M Pearson
E-mail(s) [email protected]
Organization name University of Michigan Medical School
Department Microbiology and Immunology
Lab Melanie Pearson
Street address 1150 W Medical Center Dr
City Ann Arbor
State/province MI
ZIP/Postal code 48109-0620
Country USA
 
Platforms (1)
GPL9078 UMich_Proteus mirabilis_v1.0 3.7k array
Samples (5)
GSM451348 LB vs low iron array #1
GSM451349 LB vs low iron array #2
GSM451352 LB vs low iron array #3
Relations
BioProject PRJNA119307

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE18051_RAW.tar 4.7 Mb (http)(custom) TAR (of CSV)
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap