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Series GSE179692 Query DataSets for GSE179692
Status Public on Jul 14, 2021
Title ChIP-seq analysis of BRD4-NUT and H3K27ac distribution in NUT Carcinoma cell line TC-797 treated with DMSO or Panobinostat
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary BRD4-NUT and H3K27ac are depleted from megadomains in NUT Carcinoma (NC) cell line TC-797 after treatment with Panobinostat.
 
Overall design ChIP-seq analysis of BRD4-NUT and H3K27ac distribution in NC cell line TC-797 treated with DMSO or Panobinostat.
 
Contributor(s) Shiota H, Lemieux ME, French CA
Citation(s) 34285087
Submission date Jul 07, 2021
Last update date Oct 19, 2021
Contact name Hitoshi Shiota
E-mail(s) [email protected]
Phone 6175254855
Organization name Brigham and Women's Hospital
Street address 77 Avenue Louis Pasteur, NRB rm652
City Boston
State/province Massachusetts
ZIP/Postal code 02115
Country USA
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (16)
GSM5428829 ChIP_B4N_797_DMSO_rep1_Nov2020
GSM5428830 ChIP_H3K27ac_797_DMSO_rep1_Nov2020
GSM5428831 Input_B4N_797_DMSO_rep1_Nov2020
This SubSeries is part of SuperSeries:
GSE179694 NUT Carcinoma
Relations
BioProject PRJNA744553
SRA SRP327405

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE179692_RAW.tar 5.3 Mb (http)(custom) TAR (of NARROWPEAK)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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