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Series GSE171019 Query DataSets for GSE171019
Status Public on Mar 29, 2021
Title A disease-linked lncRNA mutation in RNase MRP inhibits ribosome synthesis [human]
Organism Homo sapiens
Experiment type Other
Summary Mutations in the human RMRP gene cause Cartilage Hair Hypoplasia (CHH), an autosomal recessive disorder characterized by skeletal abnormalities and impaired T-cell activation. RMRP encodes a non-coding RNA, which forms the core of the RNase MRP ribonucleoprotein complex. In budding yeast, RMRP cleaves a specific site in the pre-ribosomal RNA (pre-rRNA) during ribosome synthesis. CRISPR-mediated disruption of RMRP in human cells lines caused growth arrest, with pre-rRNA accumulation. Here, we analyzed disease-relevant primary cells, showing that mutations in RMRP impair mouse T cell activation and delay pre-rRNA processing. Analysis of pre-rRNA processing in patient-derived human fibroblasts with CHH-linked mutations showed a similar pattern of processing delay. Human cells engineered with the most common CHH mutation (70AG in RMRP) show specifically impaired pre-rRNA processing, resulting in reduced mature rRNA and a reduced ratio of cytosolic to mitochondrial ribosomes. Moreover, the 70AG mutation caused a reduction in intact RNase MRP complexes. Together, these results indicate that CHH is a ribosomopathy, and the first human disorder of rRNA processing to be described.
 
Overall design Human K562 cells with FLAG-HIS-tagged protein components of the MRP/P complex were grown in normal media, and RNA:protein interactions stabilised with UVC irradiation. RNAs interacting with tagged proteins were purified by CRAC.
 
Contributor(s) Robertson N, Shchepachev V, Wright D, Turowski TW, Spanos C, Helwak A, Zamoyska R, Tollervey D
Citation(s) 35115551
Submission date Mar 28, 2021
Last update date Feb 23, 2022
Contact name Nic Robertson
E-mail(s) [email protected]
Organization name University of Edinburgh
Department Tollervey Lab
Street address Swann Building, Max Born Crescent
City Edinburgh
ZIP/Postal code EH9 3BF
Country United Kingdom
 
Platforms (1)
GPL21697 NextSeq 550 (Homo sapiens)
Samples (8)
GSM5216521 WT_CRAC_REP1
GSM5216522 POP1_CRAC_REP1
GSM5216523 POP4_CRAC_REP1
This SubSeries is part of SuperSeries:
GSE171021 A disease-linked lncRNA mutation in RNase MRP inhibits ribosome synthesis
Relations
BioProject PRJNA718111
SRA SRP312510

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Supplementary file Size Download File type/resource
GSE171019_RAW.tar 5.6 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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