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Series GSE162178 Query DataSets for GSE162178
Status Public on Jan 27, 2021
Title Epigenetic landscape of CD8 T cell subsets
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Open chromatin accessibility analysis of sorted CD8 Tcell subsets
 
Overall design 2-3 Biological replicates were analyzed for each of the sorted T cell subsets from lymph node and tumor draining lymph node
 
Contributor(s) Vella L, Wherry EJ
Citation(s) 33306960
Submission date Nov 25, 2020
Last update date Apr 28, 2021
Contact name Marcus Buggert
E-mail(s) [email protected]
Organization name Karolinska Institutet
Department Microbiology
Street address C2:94; Karolinska Universitetssjukhuset Huddinge
City Stockholm
State/province PA
ZIP/Postal code 141 86
Country Sweden
 
Platforms (1)
GPL21697 NextSeq 550 (Homo sapiens)
Samples (11)
GSM4944303 A_LV_S101: LN_CD8_naive_rep1
GSM4944304 A_LV_S102: LN_EM_rep1
GSM4944305 A_LV_S106: LN_EM_rep2
This SubSeries is part of SuperSeries:
GSE162180 The identity of human tissue-emigrant CD8+ T cells
Relations
BioProject PRJNA680798
SRA SRP294186

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE162178_RAW.tar 10.0 Mb (http)(custom) TAR (of TXT)
GSE162178_combUnionReadsWithLables_CD8_LN_TDL.txt.gz 5.1 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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