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Series GSE159133 Query DataSets for GSE159133
Status Public on Dec 08, 2020
Title Transcriptome sequencing analysis of MyoD-induced transdifferentiation in 10T1/2 fibroblasts using RNA-seq
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary To understand the effect of LncMyod on MyoD-induced transdifferentiation of 10T1/2 fibroblast cells, we performed RNA-seq on LncMyoD-KO 10T1/2 fibroblasts with MyoD-induced transdifferentiation.
 
Overall design The polyA+ RNA from cultured 10T1/2 fibroblast cells were sequenced using DNBSEQ-G400 sequencer (BGI) (2 x 100)
 
Contributor(s) Dong A, Yi R, Cheung TH
Citation(s) 33293420
Submission date Oct 06, 2020
Last update date Jan 19, 2021
Contact name Tom Cheung
Organization name Hong Kong University of Science and Technology
Department Division of Life Science
Street address Clear Water Bay, Kowloon
City Hong Kong
ZIP/Postal code N/A
Country Hong Kong
 
Platforms (1)
GPL28457 DNBSEQ-G400 (Mus musculus)
Samples (24)
GSM4819905 WT no treatment Rep 1
GSM4819906 WT no treatment Rep 2
GSM4819907 LncMyoD-KO clone 1 no treatment Rep 1
Relations
BioProject PRJNA667738
SRA SRP286566

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE159133_RAW.tar 153.2 Mb (http)(custom) TAR (of GTF)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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