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GEO accession:
Series GSE156741
Query DataSets for GSE156741
Status
Public on Mar 08, 2022
Title
Differential cofactor dependencies define functionally distinct types of human enhancers
Organism
Homo sapiens
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
35650434
Submission date
Aug 24, 2020
Last update date
Jun 10, 2022
Contact name
Vanja Haberle
E-mail(s)
[email protected]
Organization name
The Research Institute of Molecular Pathology (IMP)
Lab
Stark Lab
Street address
Campus-Vienna-Biocenter 1
City
Vienna
ZIP/Postal code
1030
Country
Austria
Platforms (3)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL21697
NextSeq 550 (Homo sapiens)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (123)
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GSM4743283
Med14_msAuxin_Input
GSM4743284
Med14_msAuxin_MED1_ChIP
GSM4743285
Med14_msAuxin_Nutlin_Input
GSM4743286
Med14_msAuxin_Nutlin_MED1_ChIP
GSM4743287
Med14_psAuxin_Input
GSM4743288
Med14_psAuxin_MED1_ChIP
GSM4743289
Med14_psAuxin_Nutlin_Input
GSM4743290
Med14_psAuxin_Nutlin_MED1_ChIP
GSM4743291
BRD4_msAuxin_rep1
GSM4743292
BRD4_msAuxin_rep2
GSM4743293
BRD4_psAuxin_rep1
GSM4743294
BRD4_psAuxin_rep2
GSM4743295
Med14_msAuxin_rep1
GSM4743296
Med14_msAuxin_rep2
GSM4743297
Med14_msAuxin_Nutlin_rep1
GSM4743298
Med14_msAuxin_Nutlin_rep2
GSM4743299
Med14_psAuxin_rep1
GSM4743300
Med14_psAuxin_rep2
GSM4743301
Med14_psAuxin_Nutlin_rep1
GSM4743302
Med14_psAuxin_Nutlin_rep2
GSM4743325
Parental_msAuxin_rep1 [STARR-seq]
GSM4743326
Parental_msAuxin_rep2 [STARR-seq]
GSM4743327
Parental_msAuxin_rep3 [STARR-seq]
GSM4743328
Parental_psAuxin_rep1 [STARR-seq]
GSM4743329
Parental_psAuxin_rep2 [STARR-seq]
GSM4743330
Parental_psAuxin_rep3 [STARR-seq]
GSM4743331
Brd2_msAuxin_rep1 [STARR-seq]
GSM4743332
Brd2_msAuxin_rep2 [STARR-seq]
GSM4743333
Brd2_msAuxin_rep3 [STARR-seq]
GSM4743334
Brd2_msAuxin_rep4 [STARR-seq]
GSM4743335
Brd2_psAuxin_rep1 [STARR-seq]
GSM4743336
Brd2_psAuxin_rep2 [STARR-seq]
GSM4743337
Brd2_psAuxin_rep3 [STARR-seq]
GSM4743338
Brd2_psAuxin_rep4 [STARR-seq]
GSM4743339
Brd4_msAuxin_rep1 [STARR-seq]
GSM4743340
Brd4_msAuxin_rep2 [STARR-seq]
GSM4743341
Brd4_msAuxin_rep3 [STARR-seq]
GSM4743342
Brd4_msAuxin_rep4 [STARR-seq]
GSM4743343
Brd4_psAuxin_rep1 [STARR-seq]
GSM4743344
Brd4_psAuxin_rep2 [STARR-seq]
GSM4743345
Brd4_psAuxin_rep3 [STARR-seq]
GSM4743346
Brd4_psAuxin_rep4 [STARR-seq]
GSM4743347
Brd4_msAuxin_referent [STARR-seq]
GSM4743348
Brd4_psAuxin_referent [STARR-seq]
GSM4743349
Brd4_psAuxin_1h_predegradation [STARR-seq]
GSM4743350
Brd4_psAuxin_16h_predegradation [STARR-seq]
GSM4743351
CDK7_msAuxin_rep1 [STARR-seq]
GSM4743352
CDK7_msAuxin_rep2 [STARR-seq]
GSM4743353
CDK7_msAuxin_rep3 [STARR-seq]
GSM4743354
CDK7_msAuxin_rep4 [STARR-seq]
GSM4743355
CDK7_psAuxin_rep1 [STARR-seq]
GSM4743356
CDK7_psAuxin_rep2 [STARR-seq]
GSM4743357
CDK7_psAuxin_rep3 [STARR-seq]
GSM4743358
CDK7_psAuxin_rep4 [STARR-seq]
GSM4743359
CDK8_msAuxin_rep1 [STARR-seq]
GSM4743360
CDK8_msAuxin_rep2 [STARR-seq]
GSM4743361
CDK8_msAuxin_rep3 [STARR-seq]
GSM4743362
CDK8_msAuxin_rep4 [STARR-seq]
GSM4743363
CDK8_psAuxin_rep1 [STARR-seq]
GSM4743364
CDK8_psAuxin_rep2 [STARR-seq]
GSM4743365
CDK8_psAuxin_rep3 [STARR-seq]
GSM4743366
CDK8_psAuxin_rep4 [STARR-seq]
GSM4743367
CDK9_msAuxin_rep1 [STARR-seq]
GSM4743368
CDK9_msAuxin_rep2 [STARR-seq]
GSM4743369
CDK9_psAuxin_rep1 [STARR-seq]
GSM4743370
CDK9_psAuxin_rep2 [STARR-seq]
GSM4743371
Med14_msAuxin_rep1 [STARR-seq]
GSM4743372
Med14_msAuxin_rep2 [STARR-seq]
GSM4743373
Med14_msAuxin_rep3 [STARR-seq]
GSM4743374
Med14_msAuxin_rep4 [STARR-seq]
GSM4743375
Med14_psAuxin_rep1 [STARR-seq]
GSM4743376
Med14_psAuxin_rep2 [STARR-seq]
GSM4743377
Med14_psAuxin_rep3 [STARR-seq]
GSM4743378
Med14_psAuxin_rep4 [STARR-seq]
GSM4743379
MLL4_msAuxin_rep1 [STARR-seq]
GSM4743380
MLL4_msAuxin_rep2 [STARR-seq]
GSM4743381
MLL4_msAuxin_rep3 [STARR-seq]
GSM4743382
MLL4_msAuxin_rep4 [STARR-seq]
GSM4743383
MLL4_psAuxin_rep1 [STARR-seq]
GSM4743384
MLL4_psAuxin_rep2 [STARR-seq]
GSM4743385
MLL4_psAuxin_rep3 [STARR-seq]
GSM4743386
MLL4_psAuxin_rep4 [STARR-seq]
GSM4743387
p300CBP_msAuxin_rep1 [STARR-seq]
GSM4743388
p300CBP_msAuxin_rep2 [STARR-seq]
GSM4743389
p300CBP_msAuxin_rep3 [STARR-seq]
GSM4743390
p300CBP_msAuxin_rep4 [STARR-seq]
GSM4743391
p300CBP_psAuxin_rep1 [STARR-seq]
GSM4743392
p300CBP_psAuxin_rep2 [STARR-seq]
GSM4743393
p300CBP_psAuxin_rep3 [STARR-seq]
GSM4743394
p300CBP_psAuxin_rep4 [STARR-seq]
GSM5580156
WT_HCT116_DMSO_Input_rep1
GSM5580157
WT_HCT116_DMSO_MED1_ChIP_rep1
GSM5580158
WT_HCT116_DMSO_Input_rep2
GSM5580159
WT_HCT116_DMSO_MED1_ChIP_rep2
GSM5580160
WT_HCT116_Nutlin_Input_rep1
GSM5580161
WT_HCT116_Nutlin_MED1_ChIP_rep1
GSM5580162
WT_HCT116_Nutlin_Input_rep2
GSM5580163
WT_HCT116_Nutlin_MED1_ChIP_rep2
GSM5581673
WT_DMSO_rep1
GSM5581674
WT_DMSO_rep2
GSM5581675
WT_3hrNutlin_rep1
GSM5581676
WT_3hrNutlin_rep2
GSM5581677
Med14_0hrIAA_0hrNutlin_rep1
GSM5581678
Med14_0hrIAA_0hrNutlin_rep2
GSM5581679
Med14_0hrIAA_3hrNutlin_rep1
GSM5581680
Med14_0hrIAA_3hrNutlin_rep2
GSM5581681
Med14_3hrIAA_0hrNutlin_rep1
GSM5581682
Med14_3hrIAA_0hrNutlin_rep2
GSM5581683
Med14_3hrIAA_3hrNutlin_rep1
GSM5581684
Med14_3hrIAA_3hrNutlin_rep2
GSM5581685
BRD4_0hrIAA_0hrNutlin_rep1
GSM5581686
BRD4_0hrIAA_0hrNutlin_rep2
GSM5581687
BRD4_0hrIAA_3hrNutlin_rep1
GSM5581688
BRD4_0hrIAA_3hrNutlin_rep2
GSM5581689
BRD4_3hrIAA_0hrNutlin_rep1
GSM5581690
BRD4_3hrIAA_0hrNutlin_rep2
GSM5581691
BRD4_3hrIAA_3hrNutlin_rep1
GSM5581692
BRD4_3hrIAA_3hrNutlin_rep2
GSM5582238
STAPseq_BRD4_msAuxin_rep1
GSM5582239
STAPseq_BRD4_msAuxin_rep2
GSM5582240
STAPseq_BRD4_psAuxin_rep1
GSM5582241
STAPseq_BRD4_psAuxin_rep2
GSM5582242
STAPseq_input_TATA_CCAATbox_library
This SuperSeries is composed of the following SubSeries:
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GSE156736
Differential cofactor dependencies define functionally distinct types of human enhancers (ChIP-seq)
GSE156737
Differential cofactor dependencies define functionally distinct types of human enhancers (PRO-seq)
GSE156740
Differential cofactor dependencies define functionally distinct types of human enhancers (STARR-seq)
GSE184236
Differential cofactor dependencies define functionally distinct types of human enhancers (STAP-seq)
Relations
BioProject
PRJNA658951
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE156741_RAW.tar
6.7 Gb
(http)
(custom)
TAR (of BW, NARROWPEAK, TXT)
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