NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE154259 Query DataSets for GSE154259
Status Public on Jul 13, 2020
Title Tuft cells restrain pancreatic tumorigenesis through paracrine eicosanoid signaling [single-cell RNA-seq]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We performed Smart-seq2 scRNAseq on 156 pancreatic tuft cells . We also profiled FACS sorted EpCAM+;CD45+ immune cells and EpCAM-;CD45- non-immune stroma cells from from 3 caerulein-treated KC and 2 caerulein-treated KPouC pancreata by using the 10X Genomics 3' scRNAseq v3.1 kit.
 
Overall design single cell transcriptional profiling of pancreatic tuft cells using Smart-seq2 platform, and immume + stromal cells from caerulein-treated KC and KPouC mice pancreas.
 
Contributor(s) Wahl GM, DelGiorno KE, Chung C, Lytle N, Ma Z
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Jul 12, 2020
Last update date Jul 13, 2020
Contact name Zhibo Ma
E-mail(s) [email protected]
Organization name Salk Institute for Biological Studies
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province California
ZIP/Postal code 92037
Country USA
 
Platforms (2)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
GPL21626 NextSeq 550 (Mus musculus)
Samples (161)
GSM4667741 KC_7464_immune_Stromal
GSM4667742 KC_7522_immune_Stromal
GSM4667743 KC_7524_immune_Stromal
This SubSeries is part of SuperSeries:
GSE154260 Tuft cells restrain pancreatic tumorigenesis through paracrine eicosanoid signaling
Relations
BioProject PRJNA645678
SRA SRP271441

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE154259_KC_7464_filtered_feature_bc_matrix.csv.gz 8.8 Mb (ftp)(http) CSV
GSE154259_KC_7522_filtered_feature_bc_matrix.csv.gz 9.4 Mb (ftp)(http) CSV
GSE154259_KC_7524_filtered_feature_bc_matrix.csv.gz 8.7 Mb (ftp)(http) CSV
GSE154259_KPouC_7465_filtered_feature_bc_matrix.csv.gz 10.3 Mb (ftp)(http) CSV
GSE154259_KPouC_7527_filtered_feature_bc_matrix.csv.gz 10.7 Mb (ftp)(http) CSV
GSE154259_geneCounts_norm_tuft-smartSeq2_scRNAseq.txt.gz 2.0 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap