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| Status |
Public on Feb 17, 2022 |
| Title |
Transcriptomic characterization of locally relapsed brain metastases after neurosurgery |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Intracranial implantation of H2030-BrM cells in nude mice was performed to obtain established brain metastases. Survival neurosurgery was performed and resected tumors were processed to obtain RNA. Animals were followed for local relapse in the resection area and relapsed tumors were processed at endpoint to obtain RNA. RNA-seq was performed and data was analyzed by matched pairs (resected and relapsed tumors from the same animal).
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| |
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| Overall design |
Matched resected and relapsed brain metastases from a novel preclinical model incorporating neurosurgery were compared using RNA-seq
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| |
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| Contributor(s) |
Zhu L, Graña-Castro O, Valiente M |
| Citation(s) |
35174975 |
| |
| Submission date |
Jun 24, 2020 |
| Last update date |
Feb 18, 2022 |
| Contact name |
Osvaldo Graña |
| Organization name |
CNIO
|
| Department |
Structural Biology
|
| Lab |
Bioinformatics Unit
|
| Street address |
C/ Melchor Fernández Almagro, 3
|
| City |
Madrid |
| State/province |
Comunidad de Madrid |
| ZIP/Postal code |
28029 |
| Country |
Spain |
| |
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| Platforms (1) |
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| Samples (12)
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| Relations |
| BioProject |
PRJNA641671 |
| SRA |
SRP268682 |
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