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Series GSE15258 Query DataSets for GSE15258
Status Public on Sep 14, 2009
Title Whole blood transcript profiling of rheumatoid arthritis patients
Organism Homo sapiens
Experiment type Expression profiling by array
Summary The whole blood was collected pre-treatment from rheumatoid arthritis patients starting the anti_TNF therapy. All patients were naïve to anti_TNFs. The disease activity was measured using the DAS28 score at the pre-treatment visit1 (DAS28_v1) and 14 weeks after treatment visit3 (DAS28_v3). The response to the therapy was evaluated using the EULAR [European League Against Rheumatism] definition of the response. The objective of the data analysis was to identify gene expression coorelating with response as well as to identify genes that differentiate responders versus non-responders pre-treatment. The results of this investigation identified 8 trainscripts that predict responders vs. non-responders with 89% accuracy.
 
Overall design Patients' response to anti-TNF was assessed using EULAR score and patients were classified as responders, moderate responders and non-responders. Genes correlating with the response status have been identified.
 
Contributor(s) Bienkowska J, Gregersen PK, Batlivwalla F, Carulli J
Citation(s) 19699293
Submission date Mar 17, 2009
Last update date Mar 25, 2019
Contact name Jadwiga Bienkowska
E-mail(s) [email protected]
Phone 6174602469
Organization name BiogenIdec
Street address 45 Fayette Str Apt 3
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
 
Platforms (1)
GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
Samples (86)
GSM381194 NSG001
GSM381195 NSG003
GSM381196 NSG004
Relations
BioProject PRJNA116555

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE15258_RAW.tar 352.8 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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