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| Status |
Public on Jun 05, 2023 |
| Title |
Transcriptome Alterations Associated with Age-Related Decline in Physical Function |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
One inevitable consequence of the effect of age on our bodies is the graduated deterioration of physical function and exercise capacity, driven, in part by the adverse effect of age on muscle tissue. Our primary purpose was to determine the relationship between patterns of gene expression in skeletal muscle and loss of physical function. We hypothesized that some genes that change expression with age would correlate with functional decline, or conversely with preservation of function. Male C57Bl/6 mice were randomly selected from large cohorts [RNA isolated from: adults (6-7 months old, n=9), older (24-25 months old, n=9), and elderly (28+ months of age, n=9)} that were tested for physical ability using a comprehensive functional assessment battery [CFAB, a composite scoring system: comprised of the rotarod (overall motor function), grip strength (fore-limb strength), inverted cling (4-limb strength/endurance), voluntary wheel running (activity rate/volitional exercise), and treadmill tests (endurance)]. We extracted RNA from the tibialis anterior muscles, ran RNAseq to examine the transcriptome using an Illumina NextSeq 550, comparing adults (n=7) to older (n=7) and elderly mice (n=9). Age resulted in gene expression differences of 1.5 log2 fold change or greater (p<0.01) in 46 genes in the older mice and in 252 genes in the elderly (both compared to adults). Current ongoing work is examining the physiological relevance of these genes to age-related loss of physical function. We are in the process of using linear regression to determine which of the genes with age-related changes in expression are associated (R>0.5 and p<0.05) with functional status as measured by CFAB.
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| Overall design |
Next Generation Sequencing of adult mice (6 months old, n=7) versus older mice (24 month old, n=8) and samples from the same adult mouse (n=7) with elderly mice (28+ months old, n=7). All three groups were extensively tested for physical function and exercise capacity, which declined with age.
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| Contributor(s) |
Graber TG, Maroto R, Thompson JK, Widen SG, Rasmussen B |
| Citation |
Graber TG, Maroto R, Thompson JK, Widen SG, Man Z, Pajski ML, Rasmussen BB. Skeletal Muscle Transcriptome Alterations Related to Declining Physical Function in Older Mice. Journal of Ageing and Longevity. 2023; 3(2):159-178. doi:10.3390/jal3020013 NIHMSID:1905574
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| Submission date |
Jun 09, 2020 |
| Last update date |
Jun 05, 2023 |
| Contact name |
Ted G. Graber |
| E-mail(s) |
[email protected]
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| Phone |
252-744-6234
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| Organization name |
East Carolina University
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| Department |
Physical Therapy
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| Lab |
Graber Neuromuscular Physiology Lab
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| Street address |
600 Moye BLVD., Mail Route 668
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| City |
Greenville |
| State/province |
NC |
| ZIP/Postal code |
27834 |
| Country |
USA |
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| Platforms (1) |
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| Samples (29)
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| Relations |
| BioProject |
PRJNA638391 |
| SRA |
SRP266645 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE152133_full.read.counts.tsv.gz |
859.5 Kb |
(ftp)(http) |
TSV |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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