NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE151112 Query DataSets for GSE151112
Status Public on Feb 20, 2021
Title Asterix/Gtsf1 links tRNAs and piRNA silencing of retrotransposons
Organisms Spodoptera frugiperda; Drosophila melanogaster; Mus musculus
Experiment type Other
Summary This SuperSeries is composed of the SubSeries listed below.
For processing workflows and scripts, please refer to https://github.com/jonipsaro/asterix_gtsf1
 
Overall design Refer to individual Series
 
Citation(s) 33789107
NIH grant(s)
Grant ID Grant title Affiliation Name
F32 GM097888 Structural Basis for RNA-induced Silencing via the Piwi Clade of Argonautes COLD SPRING HARBOR LABORATORY JONATHAN JAMES IPSARO
Submission date May 24, 2020
Last update date Apr 01, 2021
Contact name Jonathan James Ipsaro
E-mail(s) [email protected]
Organization name Cold Spring Harbor Laboratory
Lab Leemor Joshua-Tor
Street address 1 Bungtown Road
City Cold Spring Harbor
State/province NY
ZIP/Postal code 11724
Country USA
 
Platforms (3)
GPL19057 Illumina NextSeq 500 (Mus musculus)
GPL19132 Illumina NextSeq 500 (Drosophila melanogaster)
GPL27985 Illumina NextSeq 500 (Spodoptera frugiperda)
Samples (24)
GSM4566708 Asterix-Strep eCLIP - non-crosslinked_input
GSM4566709 Asterix-Strep eCLIP - crosslinked_input1
GSM4566710 Asterix-Strep eCLIP - crosslinked_input2
This SuperSeries is composed of the following SubSeries:
GSE151107 eCLIP of Drosophila Asterix/Gtsf1 transfected in Drosophila ovarian somatic sheath (OSS) cells
GSE151108 eCLIP of mouse Asterix/Gtsf1 transfected in mouse P19 embryonal teratoma cells
GSE151109 eCLIP of Drosophila Asterix/Gtsf1 (endogenous promoter) in Drosophila ovarian somatic sheath (OSS) cells
Relations
BioProject PRJNA634754

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE151112_RAW.tar 100.7 Mb (http)(custom) TAR (of FASTA, TXT)
SRA Run SelectorHelp
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap