GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Series GSE150186
Query DataSets for GSE150186
Status
Public on Oct 26, 2021
Title
Brahma safeguards canalization of cardiac mesoderm differentiation
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
35082446
Submission date
May 09, 2020
Last update date
Feb 04, 2022
Contact name
Benoit Bruneau
E-mail(s)
[email protected]
Organization name
Gladstone Institute of Cardiovascular Disease
Street address
1650 Owens Street
City
San Francisco
State/province
CA
ZIP/Postal code
94158
Country
USA
Platforms (3)
GPL19057
Illumina NextSeq 500 (Mus musculus)
GPL21103
Illumina HiSeq 4000 (Mus musculus)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
Samples (148)
Less...
More...
GSM3227582
WT_MES rep 1
GSM3227583
WT_MES rep 2
GSM3227584
WT_MES rep 3
GSM3227585
WT_CP rep 1
GSM3227586
WT_CP rep 2
GSM3227587
WT_CP rep 3
GSM3227588
WT_CM rep 1
GSM3227589
WT_CM rep 2
GSM3227590
WT_CM rep 3
GSM3227591
BRMKO_MES rep 1
GSM3227592
BRMKO_MES rep 2
GSM3227593
BRMKO_MES rep 3
GSM3227594
BRMKO_CP rep 1
GSM3227595
BRMKO_CP rep 2
GSM3227596
BRMKO_CP rep 3
GSM3227597
BRMKO_CM rep 1
GSM3227598
BRMKO_CM rep 2
GSM3227599
BRMKO_CM rep 3
GSM4542765
WT_D4_normalBMP4_Rep1_ATAC-seq
GSM4542766
WT_D4_normalBMP4_Rep2_ATAC-seq
GSM4542767
WT_D4_normalBMP4_Rep3_ATAC-seq
GSM4542768
WT_D4_normalBMP4_Rep4_ATAC-seq
GSM4542769
BrmKO_D4_normalBMP4_Rep1_ATAC-seq
GSM4542770
BrmKO_D4_normalBMP4_Rep2_ATAC-seq
GSM4542771
BrmKO_D4_normalBMP4_Rep3_ATAC-seq
GSM4542772
BrmKO_D4_normalBMP4_Rep4_ATAC-seq
GSM4542773
WT_D4_highBMP4_Rep1_ATAC-seq
GSM4542774
WT_D4_highBMP4_Rep2_ATAC-seq
GSM4542775
WT_D4_highBMP4_Rep3_ATAC-seq
GSM4542776
WT_D4_highBMP4_Rep4_ATAC-seq
GSM4542777
BrmKO_D4_highBMP4_Rep1_ATAC-seq
GSM4542778
BrmKO_D4_highBMP4_Rep2_ATAC-seq
GSM4542779
BrmKO_D4_highBMP4_Rep3_ATAC-seq
GSM4542780
BrmKO_D4_highBMP4_Rep4_ATAC-seq
GSM4542781
WT_D6_normalBMP4_Rep1_ATAC-seq
GSM4542782
WT_D6_normalBMP4_Rep2_ATAC-seq
GSM4542783
BrmKO_D6_normalBMP4_Rep1_ATAC-seq
GSM4542784
BrmKO_D6_normalBMP4_Rep2_ATAC-seq
GSM4542785
BrmKO_D6_normalBMP4_Rep3_ATAC-seq
GSM4542786
WT_D6_highBMP4_Rep1_ATAC-seq
GSM4542787
WT_D6_highBMP4_Rep2_ATAC-seq
GSM4542788
BrmKO_D6_highBMP4_Rep1_ATAC-seq
GSM4542789
BrmKO_D6_highBMP4_Rep2_ATAC-seq
GSM4542790
WT_D10_normalBMP4_Rep1_ATAC-seq
GSM4542791
WT_D10_normalBMP4_Rep2_ATAC-seq
GSM4542792
WT_D10_normalBMP4_Rep3_ATAC-seq
GSM4542793
WT_D10_normalBMP4_Rep4_ATAC-seq
GSM4542794
BrmKO_D10_normalBMP4_Rep1_ATAC-seq
GSM4542795
BrmKO_D10_normalBMP4_Rep2_ATAC-seq
GSM4542796
BrmKO_D10_normalBMP4_Rep3_ATAC-seq
GSM4542797
WT_D10_highBMP4_Rep1_ATAC-seq
GSM4542798
WT_D10_highBMP4_Rep2_ATAC-seq
GSM4542799
WT_D10_highBMP4_Rep3_ATAC-seq
GSM4542800
BrmKO_D10_highBMP4_Rep1_ATAC-seq
GSM4542801
BrmKO_D10_highBMP4_Rep2_ATAC-seq
GSM4542802
D4_Input
GSM4542803
D6_Input
GSM4542804
D10_Input
GSM4542805
D4_lowSDS_FLAG_eluted_ChIP-Seq
GSM4542806
D4_lowSDS_FLAG_65C_eluted_ChIP-Seq
GSM4542807
D4_highSDS_FLAG_eluted_ChIP-Seq
GSM4542808
D4_highSDS_FLAG_65C_eluted_ChIP-Seq
GSM4542809
D6_lowSDS_FLAG_eluted_ChIP-Seq
GSM4542810
D6_lowSDS_FLAG_65C_eluted_ChIP-Seq
GSM4542811
D6_highSDS_FLAG_eluted_ChIP-Seq
GSM4542812
D6_highSDS_FLAG_65C_eluted_ChIP-Seq
GSM4542813
D10_lowSDS_FLAG_eluted_ChIP-Seq
GSM4542814
D10_lowSDS_FLAG_65C_eluted_ChIP-Seq
GSM4542815
D10_highSDS_FLAG_eluted_ChIP-Seq
GSM4542816
D10_highSDS_FLAG_65C_eluted_ChIP-Seq
GSM4542817
D4_WT_H3K27Ac_ChIP_rep1
GSM4542818
D4_WT_Input_rep1
GSM4542819
D4_WT_H3K27Ac_ChIP_rep2
GSM4542820
D4_WT_Input_rep2
GSM4542821
D4_BrmKO_H3K27Ac_ChIP_rep1
GSM4542822
D4_BrmKO_Input_rep1
GSM4542823
D4_BrmKO_H3K27Ac_ChIP_rep2
GSM4542824
D4_BrmKO_Input_rep2
GSM4542825
D6_WT_H3K27Ac_ChIP_rep1
GSM4542826
D6_WT_Input_rep1
GSM4542827
D6_WT_H3K27Ac_ChIP_rep2
GSM4542828
D6_WT_Input_rep2
GSM4542829
D6_BrmKO_H3K27Ac_ChIP_rep1
GSM4542830
D6_BrmKO_Input_rep1
GSM4542831
D6_BrmKO_H3K27Ac_ChIP_rep2
GSM4542832
D6_BrmKO_Input_rep2
GSM4542833
D10_WT_H3K27Ac_ChIP_rep1
GSM4542834
D10_WT_Input_rep1
GSM4542835
D10_WT_H3K27Ac_ChIP_rep2
GSM4542836
D10_WT_Input_rep2
GSM4542837
D10_BrmKO_H3K27Ac_ChIP_rep1
GSM4542838
D10_BrmKO_Input_rep1
GSM4542839
D10_BrmKO_H3K27Ac_ChIP_rep2
GSM4542840
D10_BrmKO_Input_rep2
GSM4542841
D4_WT_H3K27me3_ChIP_rep1
GSM4542842
D4_WT_H3K27me3_ChIP_rep2
GSM4542843
D4_BrmKO_H3K27me3_ChIP_rep1
GSM4542844
D4_BrmKO_H3K27me3_ChIP_rep2
GSM4542845
D6_WT_H3K27me3_ChIP_rep1
GSM4542846
D6_WT_H3K27me3_ChIP_rep2
GSM4542847
D6_BrmKO_H3K27me3_ChIP_rep1
GSM4542848
D6_BrmKO_H3K27me3_ChIP_rep2
GSM4542849
D10_WT_H3K27me3_ChIP_rep1
GSM4542850
D10_WT_H3K27me3_ChIP_rep2
GSM4542851
D10_BrmKO_H3K27me3_ChIP_rep1
GSM4542852
D10_BrmKO_H3K27me3_ChIP_rep2
GSM4542853
D4_WT
GSM4542854
D4_BRG1cKO
GSM4542855
D10_WT
GSM4542856
D10_BRG1cKO
GSM4542857
WT_CM_scRNA-seq
GSM4542858
BRM_KO_CM_scRNA-seq
GSM4542859
D4_WT_normal_BMP4_scRNA-seq
GSM4542860
D4_BrmKO_normal_BMP4_scRNA-seq
GSM4542861
D4_WT_high_BMP4_scRNA-seq
GSM4542862
D4_BrmKO_high_BMP4_scRNA-seq
GSM4542863
D6_WT_normal_BMP4_scRNA-seq
GSM4542864
D6_BrmKO_normal_BMP4_scRNA-seq
GSM4542865
D6_WT_high_BMP4_scRNA-seq
GSM4542866
D6_BrmKO_high_BMP4_scRNA-seq
GSM4542867
D10_WT_normal_BMP4_scRNA-seq
GSM4542868
D10_BrmKO_normal_BMP4_scRNA-seq
GSM4542869
D10_WT_high_BMP4_scRNA-seq
GSM4542870
D10_BrmKO_high_BMP4_scRNA-seq
GSM5370892
D0_WT_Rep1 scRNA-seq
GSM5370893
D0_WT_Rep2 scRNA-seq
GSM5370894
D0_BRM KO_Rep1 scRNA-seq
GSM5370895
D0_BRM KO_Rep2 scRNA-seq
GSM5374900
WT_D0_Rep1 ATAC-seq
GSM5374901
WT_D0_Rep2 ATAC-seq
GSM5374902
WT_D0_Rep3 ATAC-seq
GSM5374903
BrmKO_D0_Rep1 ATAC-seq
GSM5374904
BrmKO_D0_Rep2 ATAC-seq
GSM5374905
BrmKO_D0_Rep3 ATAC-seq
GSM5374906
WT_D2_Rep1 ATAC-seq
GSM5374907
WT_D2_Rep2 ATAC-seq
GSM5374908
WT_D2_Rep3 ATAC-seq
GSM5374909
BrmKO_D2_Rep1 ATAC-seq
GSM5374910
BrmKO_D2_Rep2 ATAC-seq
GSM5374911
BrmKO_D2_Rep3 ATAC-seq
GSM5374912
D4_WT_Input
GSM5374913
D4_WT_REST_ChIPseq
GSM5374914
D4_BRMKO_Input
GSM5374915
D4_BRMKO_REST_ChIPseq
GSM5374916
D6_WT_Input
GSM5374917
D6_WT_REST_ChIPseq
GSM5374918
D6_BRMKO_Input
GSM5374919
D6_BRMKO_REST_ChIPseq
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE116292
Chromatin remodeler Brahma safeguards canalization in cardiac mesoderm differentiation [RNA-seq]
GSE150180
ATACseq of WT and BRM KO cells at D4, D6 and D10 of cardiac differentiation
GSE150181
BRM-3xFLAG ChIPseq at D4, D6 and D10 of cardiac differentiation
GSE150182
H3K27ac amd H3K27me3 ChIPseq of WT and BRM KO at D4, D6 and D10 of cardiac differentiation
GSE150183
Single cell RNAseq of WT and BRG1 conditional KO at D4 and D10 of cardiac differentiation
GSE150184
WT and BRM KO scRNAseq at D10
GSE150185
Day4_Day6_Day10_normalBMP4_highBMP4_single_cell_RNAseq
GSE177035
Chromatin remodeler Brahma safeguards canalization in cardiac mesoderm differentiation [scRNA-seq]
GSE177480
Chromatin remodeler Brahma safeguards canalization in cardiac mesoderm differentiation [ATAC-seq]
GSE177481
Chromatin remodeler Brahma safeguards canalization in cardiac mesoderm differentiation [ChIP-seq]
Relations
BioProject
PRJNA631413
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE150186_RAW.tar
41.6 Gb
(http)
(custom)
TAR (of BIGWIG, BW)
SRA Run Selector
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|