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| Status |
Public on Apr 14, 2023 |
| Title |
Transcriptomic changes of optic nerves under crush during hibernation stage |
| Organism |
Ictidomys tridecemlineatus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
we compared the gene expression changes of crushed optic nerves from hibernating and awake squirrels.
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| |
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| Overall design |
Optic nerves from hibernating and awake 13-lined squirrels were crushed, and total RNAs were extracted and sequenced 3 days after treated. Three replicates were included for hibernation group and awake group. Paired-end library following Illumina TruSeq stranded protocol was constructed, and subjected to RNA-Seq.
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| |
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| Contributor(s) |
Li W, Xie Z, Ou J, Luan Y |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Apr 14, 2020 |
| Last update date |
Apr 16, 2023 |
| Contact name |
Yizhao Luan |
| E-mail(s) |
[email protected]
|
| Organization name |
Sun Yat-sen university
|
| Department |
Zhongshan Ophthalmic Center
|
| Street address |
Xianlie South Rd. 54, Yuexiu Dist
|
| City |
Guangzhou |
| State/province |
Guangdong |
| ZIP/Postal code |
510060 |
| Country |
China |
| |
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| Platforms (1) |
| GPL22974 |
Illumina HiSeq 2000 (Ictidomys tridecemlineatus) |
|
| Samples (6)
|
| GSM4476137 |
Crushed optic nerves, replicate 1 from hibernators |
| GSM4476138 |
Crushed optic nerves, replicate 2 from hibernators |
| GSM4476139 |
Crushed optic nerves, replicate 3 from hibernators |
| GSM4476140 |
Crushed optic nerves, replicate 1 from awake animals |
| GSM4476141 |
Crushed optic nerves, replicate 2 from awake animals |
| GSM4476142 |
Crushed optic nerves, replicate 3 from awake animals |
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| Relations |
| BioProject |
PRJNA625279 |
| SRA |
SRP256347 |
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