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Series GSE148162 Query DataSets for GSE148162
Status Public on May 01, 2020
Title Dual Relief of T-Lymphocyte Proliferation and Effector Function Underlies Response to PD-1 Blockade in Epithelial Malignancies
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Although understanding of T-cell exhaustion is widely based on mouse models, its analysis in cancer patients could provide clues indicating tumor sensitivity to immune checkpoint blockade (ICB). Data suggests a role for costimulatory pathways, particularly CD28, in exhausted T-cell responsiveness to PD-1/PD-L1 blockade. Here, we used single-cell transcriptomic, phenotypic, and functional approaches to dissect the relation between CD8+ T-cell exhaustion, CD28 costimulation, and tumor specificity in head and neck, cervical, and ovarian cancers. We found that memory tumor-specific CD8+ T cells, but not bystander cells, sequentially express immune checkpoints once they infiltrate tumors leading, in situ, to a functionally exhausted population. Exhausted T cells were nonetheless endowed with effector and tumor residency potential but exhibited loss of the costimulatory receptor CD28 in comparison to their circulating memory counterparts. Accordingly, PD-1 inhibition improved proliferation of circulating tumor-specific CD8 T cells and reversed functional exhaustion of specific T cells at tumor sites. In agreement with their tumor specificity, high infiltration of tumors by exhausted cells was predictive of response to therapy and survival in ICB-treated head and neck cancer patients. Our results showed that PD-1 blockade–mediated proliferation/reinvigoration of circulating memory T cells and local reversion of exhaustion occur concurrently to control tumors.
 
Overall design 4 head and neck, cervical, and ovarian cancers
 
Contributor(s) Balança C, Scarlata C, Michelas M, Tosolini M, Ayyoub M
Citation(s) 32295784, 33332284
Submission date Apr 06, 2020
Last update date Mar 16, 2021
Contact name Clara-Maria Scarlata
E-mail(s) [email protected]
Organization name INSERM
Street address 2 avenue Hubert Curien
City Toulouse
State/province toulouse
ZIP/Postal code 31037
Country France
 
Platforms (1)
GPL21697 NextSeq 550 (Homo sapiens)
Samples (4)
GSM4455312 S526_CD8
GSM4455313 S533_CD8
GSM4455314 S624_CD8
Relations
BioProject PRJNA623361
SRA SRP255417

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE148162_RAW.tar 8.1 Mb (http)(custom) TAR (of TSV)
GSE148162_UMAP_coordinate.tsv.gz 140.2 Kb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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