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Series GSE147491 Query DataSets for GSE147491
Status Public on Jul 14, 2021
Title Cep135 deficiency promotes cell cycle de-regulation, p53 accumulation and cell deah of neural progenitors
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Gene expression profiles of Cep135 wildtype and knockout E14.4 and E11.5 mouse embryonic neocortices. Gene expression profiles of in vitro E14.5 cortices-derived primary neurospheres are also included; in vitro samples listed as "12h" or "24h" depending on the duration of the in vitro culture from NPs isolation for incipient neurosphere formation and RNA isolation for RNAseq.
 
Overall design E11.5 and E14.5 embryos resulting from matings between cep135 (+/-) mice were sacrificed and dorsal telencephalons dissected out to RNA isolation and RNAseq analysis. In the case of E14.5 telencephalons, E14.5 cortical neural progenitors were also isolated and cultured for 12 and 24h for the formation of incipient neurospheres. RNAseq analysis of these in vitro cultures is also available.
 
Contributor(s) González J, Graña-Castro O, Malumbres M
Citation(s) 34237032
Submission date Mar 24, 2020
Last update date Jul 16, 2021
Contact name Osvaldo Graña
Organization name CNIO
Department Structural Biology
Lab Bioinformatics Unit
Street address C/ Melchor Fernández Almagro, 3
City Madrid
State/province Comunidad de Madrid
ZIP/Postal code 28029
Country Spain
 
Platforms (1)
GPL21626 NextSeq 550 (Mus musculus)
Samples (24)
GSM4431961 TBI180_1 12h (cep135 null neurospheres 12h)
GSM4431962 TBI180_1 24h (cep135 null neurospheres 24h)
GSM4431963 TBI180_1 (cep135 null E14.5 cortex)
Relations
BioProject PRJNA614971
SRA SRP253909

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Supplementary file Size Download File type/resource
GSE147491_ALLsamples.normalizedCounts.txt.gz 3.0 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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