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Series GSE146879 Query DataSets for GSE146879
Status Public on Mar 13, 2020
Title Transcriptome of Pseudomonas putida KT2440 harboring plasmid RP4 during conjugative transfer
Organism Pseudomonas putida KT2440
Experiment type Expression profiling by array
Summary We analyzed gene expression during conjugative transfer of plasmid RP4. Pairs of rifampicin-susceptible (RifS) and -resistance (RifR) strains of Pseudomonas putida KT2440 were conjugated for 10 minute on filter membrane in the presence of rifampicin to discriminate the expression changes in the donor and recipient cells.
 
Overall design 8 samples in duplicate.
 
Contributor(s) Miyakoshi M
Citation(s) 32625173
Submission date Mar 12, 2020
Last update date Jul 14, 2020
Contact name Masatoshi Miyakoshi
E-mail(s) [email protected]
Organization name University of Tsukuba
Street address 1-1-1 Tennoudai
City Tsukuba
State/province Ibaraki
ZIP/Postal code 305-8575
Country Japan
 
Platforms (1)
GPL28267 Pseudomonas putida KT2440 plus RP4 plasmid_4plex array
Samples (16)
GSM4408296 SAMPLE 1: RNA sample from conjugation between RifS donor and RifR recipient replicate 2
GSM4408297 SAMPLE 2: Mixture of RNA samples from RifR donor and RifS recipient replicate 2
GSM4408298 SAMPLE 3: RNA sample from conjugation between RifR donor and RifR recipient replicate 2
Relations
BioProject PRJNA612297

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE146879_RAW.tar 27.3 Mb (http)(custom) TAR (of CALLS, PAIR, TXT)
GSE146879_RMA_matrix_with_gene_annotations.txt.gz 675.2 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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