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Series GSE14221 Query DataSets for GSE14221
Status Public on Dec 25, 2009
Title TgFVB vs FVB 6 and 8 week kidneys
Organism Mus musculus
Experiment type Expression profiling by array
Summary Human Immunodeficiency Virus (HIV) associated nephropathy (HIVAN) is characterized clinically by both nephrosis and by rapidly progressive kidney dysfunction. HIVAN is characterized histologically by both collapsing focal segmental glomerulosclerosis and prominent tubular damage. Neutrophil Gelatinase Associated Lipocalin (NGAL) is known to be rapidly expressed in distal segments of the nephron at the onset of different types of acute kidney injury, but few studies have examined NGAL in chronic kidney disease models. We found that urinary NGAL (uNGAL) was highly expressed by patients with biopsy proven HIVAN, whereas HIV+ patients without HIVAN demonstrated lower levels. uNGAL was also highly expressed in the TgFVB mouse model of HIVAN, which demonstrated NGAL gene expression in dilated, microcystic segments of the nephron. These data show that NGAL is markedly upregulated in the setting of HIVAN, and suggest that uNGAL levels may provide a non-invasive screening test to detect HIVAN related tubular disease.
 
Overall design Microarray data revealed that NGAL was one of the most highly upregulated gene the TgFVB mouse.
 
Citation(s) 19628667
Submission date Dec 25, 2008
Last update date Feb 11, 2019
Contact name Neal A Paragas
E-mail(s) [email protected]
Organization name University of Washington
Street address 850 Republican St
City Seattle
State/province WA
ZIP/Postal code 98109
Country USA
 
Platforms (1)
GPL1261 [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array
Samples (4)
GSM356334 TgFVB Kidney 6wk
GSM356335 TgFVB Kidney 8wk
GSM356336 FVB Kidney 8wk
Relations
BioProject PRJNA111183

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE14221_RAW.tar 15.8 Mb (http)(custom) TAR (of CEL, CHP)
GSE14221_RMA_normalized.txt 912.4 Kb (ftp)(http) TXT
Processed data provided as supplementary file
Processed data included within Sample table
Processed data are available on Series record

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