|
| Status |
Public on Apr 01, 2010 |
| Title |
WT and php mutants |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by array
|
| Summary |
Transcriptional profiling for wild-type and php mutants
Expression of >22,600 genes was analyzed in aerial tissues from 14 day old soil grown wild type and php mutant plants using Affymetrix ATH1 GeneChip, and two independent biological replicates. Data from CEL files were adjusted for background and normalized using the Bioconductor GCRMA package (http://www.bioconductor.org).
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| |
|
| Overall design |
Affymetrix ATH array with seedling samples from wild-type and php mutants
Aerial tissues from 14-day-old soil grown wild-type and php mutant plants were collected. Total RNAs were isolated and used for cDNA synthesis/biotin labeling following Affymetrix protocol. Affymetrix ATH1 GeneChip and two biologically independent replicates were used. Data from CEL files were adjusted for background and normalized using Bioconductor GCRMA package (transformed to Log2).
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| |
|
| Contributor(s) |
Park S, Oh S, van Nocker S |
| Citation(s) |
20363855 |
| |
| Submission date |
Dec 11, 2008 |
| Last update date |
Jun 12, 2017 |
| Contact name |
Sookyung Oh |
| E-mail(s) |
[email protected]
|
| Phone |
517-355-5191-369
|
| Organization name |
Michigan State University
|
| Department |
Horticulture
|
| Lab |
Steve van Nocker
|
| Street address |
|
| City |
East Lansing |
| State/province |
MI |
| ZIP/Postal code |
48824 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL198 |
[ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array |
|
| Samples (4)
|
|
| Relations |
| BioProject |
PRJNA110333 |
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