|
| Status |
Public on Aug 02, 2019 |
| Title |
Identification of Soybean WOX9-like binding sites in soybean seeds during seed development |
| Organism |
Glycine max |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
To dissect the gene regulatory networks operating during soybean seed development, we identified the binding sites genome-wide for transcription factor in soybean seeds during seed development using ChIP-seq
|
| |
|
| Overall design |
Identification of soybean WOX9-like binding sites in soybean seeds during seed development. ChIP and total chromatin controls (input) were obtained for two replicates. Samples were sequenced using the Illumina HiSeq2500 platform.
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| |
|
| Contributor(s) |
Goldberg RB, Apuya N, Chen M |
| Citation(s) |
33536344 |
| |
| Submission date |
Aug 01, 2019 |
| Last update date |
Apr 20, 2021 |
| Contact name |
Bob Goldberg |
| E-mail(s) |
[email protected]
|
| Phone |
310-825-3270
|
| Organization name |
University of California, Los Angeles
|
| Department |
Molecular, Cell and Developmental Biology
|
| Street address |
610 Charles E Young Drive East
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90095 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL19246 |
Illumina HiSeq 2500 (Glycine max) |
| GPL28801 |
Illumina NovaSeq 6000 (Glycine max) |
|
| Samples (8)
|
| GSM4001150 |
globular-seed-input replicate 1 (WOX9 study) |
| GSM4001151 |
heart-seed-input replicate 1 (WOX9 study) |
| GSM4001152 |
heart-seed-input replicate 2 (WOX9 study) |
| GSM4648566 |
globular-seed-WOX9-like-ChIP replicate 2 |
| GSM4648567 |
globular-seed-input replicate 2 |
|
| Relations |
| BioProject |
PRJNA558072 |
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